View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2189_low_6 (Length: 248)
Name: NF2189_low_6
Description: NF2189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2189_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 39088530 - 39088287
Alignment:
| Q |
1 |
cattagatttagatgaatgaaaaaatcatagtattgcttaca-----aaagagtatagtgttttgcattaaaaaagttatagctgacccgtccaattgct |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39088530 |
cattagatttagatgaatgaaaaaatcatagtattgcttaaattaaaaaagagtatagtgttttgcattaaaaaagttatagctgacccgtccaattgct |
39088431 |
T |
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| Q |
96 |
tcccacaatgaagcattgaatgaagcaacggtagtgatgacttgagggaagctagtggcagctgggaattggccagcaaacttagttcctggtcccacat |
195 |
Q |
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| T |
39088430 |
tcccacaaggaagcattgaatgaagcaacggtagtgatgacttgagggaagctagtggcagctgggaattggccagcaaacttagttcctggtcccacat |
39088331 |
T |
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| Q |
196 |
ttgaaactccatgaagagcctctgaccaccactcatagcctttg |
239 |
Q |
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| T |
39088330 |
ttgaaactccatgaagagcctctgaccaccactcatagcctttg |
39088287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 234
Target Start/End: Original strand, 44720905 - 44721058
Alignment:
| Q |
81 |
acccgtccaattgcttcccacaatgaagcattgaatgaagcaacggtagtgatgacttgagggaagctagtggcagctgggaattggccagcaaacttag |
180 |
Q |
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| T |
44720905 |
acccgtccaatagcctcccacaaagaagcattaaaagaagcagcggttgtgataacttgaggaaaactagtagcagcagggaacacaccaccaaatctag |
44721004 |
T |
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| Q |
181 |
ttcctggtcccacatttgaaactccatgaagagcctctgaccaccactcatagc |
234 |
Q |
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| T |
44721005 |
tacctggacccacatttgaaacaccatgaagtgcctccgaccaccactcatagc |
44721058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 13298056 - 13297929
Alignment:
| Q |
110 |
attgaatgaagcaacggtagtgatgacttgagggaagctagtggcagctgggaattggccagcaaacttagttcctggtcccacatttgaaactccatga |
209 |
Q |
| |
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|||||| |||||| |||| ||||| |||||||||||||||||||| || | ||| ||| |||| ||||| ||||| |||||||| ||||| ||||| |
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| T |
13298056 |
attgaaagaagcagcggtggtgataacttgagggaagctagtggcggcggagaaggccccaccaaatttagtacctgggcccacattagaaacaccatgt |
13297957 |
T |
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| Q |
210 |
agagcctctgaccaccactcatagcctt |
237 |
Q |
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| ||| || |||||||||||||| |||| |
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| T |
13297956 |
aaagcttccgaccaccactcataacctt |
13297929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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