View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2191_high_8 (Length: 296)
Name: NF2191_high_8
Description: NF2191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2191_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 50966117 - 50966383
Alignment:
| Q |
11 |
cacagaacacaactaatcgatgtgatatatgaagcataactattgattccaaatagcagctttctcctatatctttcccctatattgccatacttgtcaa |
110 |
Q |
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| T |
50966117 |
cacaaaacacaactaatcgatgtaatatatgaagcataactattgattccaaatagcagctttctcctatatcttccccctatatcgccatacttgtcaa |
50966216 |
T |
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| Q |
111 |
agatggattggaggacgggagcaaagctttccttcaaatggtatcttccaattggaacatgcatctcggaaaccacaaagtcactccgctctccatcatt |
210 |
Q |
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| T |
50966217 |
agatggattggaggacgggagcaaagctttccttcaaatggtatcttccaattggaacatgcatctcggaaaccacaaagtcactccactctccatcatt |
50966316 |
T |
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| Q |
211 |
atcccagagaacatcagaataacataagtccttggatccacctgttcaagtagttagaccttatcca |
277 |
Q |
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| T |
50966317 |
atcccagagaacatcagaataacataagtccttggatccacctgttcaagtagttagaccttatcca |
50966383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 209
Target Start/End: Original strand, 50996374 - 50996500
Alignment:
| Q |
83 |
ctttcccctatattgccatacttgtcaaagatggattggaggacgggagcaaagctttccttcaaatggtatcttccaattggaacatgcatctcggaaa |
182 |
Q |
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| T |
50996374 |
ctttctcctatatcaccatacttgtcaaagatggattgcaggatgggagcaaagctttccttcacatggtattttccaacaggaacacgcgtctcagaaa |
50996473 |
T |
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| Q |
183 |
ccacaaagtcactccgctctccatcat |
209 |
Q |
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| T |
50996474 |
ccacagactcactcccctcttcatcat |
50996500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 50996520 - 50996580
Alignment:
| Q |
217 |
gagaacatcagaataacataagtccttggatccacctgttcaagtagttagaccttatcca |
277 |
Q |
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| T |
50996520 |
gagaacatcagaataacagaagtgcttggatccaccagctgatgtagttagaccttctcca |
50996580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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