View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2191_low_1 (Length: 822)
Name: NF2191_low_1
Description: NF2191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2191_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 780; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 780; E-Value: 0
Query Start/End: Original strand, 21 - 808
Target Start/End: Complemental strand, 29333650 - 29332863
Alignment:
| Q |
21 |
agacgaatcactcctccatggcttcgaacttcaacaacacgtcgaaacgattcttcaatccaacgatctttcattgcttcaagaagtaatcgacgagtac |
120 |
Q |
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| T |
29333650 |
agacgaatcactcctccatggcttcgaacttcaacaacacgtcgcaacgattcttcaatccaacgatctttcatcgcttcaagaagtaatcgacgagtac |
29333551 |
T |
|
| Q |
121 |
gcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaatttc |
220 |
Q |
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| T |
29333550 |
gcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaatttc |
29333451 |
T |
|
| Q |
221 |
aacctccgattcaaacgagaatcgaaaccgttaatcatcttcttcaagttcttcccgaaggaattaacggtcctttcaattctattatcttactcgaact |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29333450 |
aacctccgattcaaacgagaatcgaaaccgttaatcatcttcttcaagttcttcccgaaggaattaacggtcctttcaattctattatcttactcgaact |
29333351 |
T |
|
| Q |
321 |
gaagaatcctcttcttcattcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttaccgg |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29333350 |
gaagaatcctcttcttcattcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttaccgg |
29333251 |
T |
|
| Q |
421 |
tgttctcttggtggttgggtggagcttcttgagtatgttctcgcttgtttttccagtgaagtgcaatcggaaaataagaaagggcttttgttgttaacgg |
520 |
Q |
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| T |
29333250 |
tgttctcttggtggttgggtggagcttcttgagtatgttctcgcttgtttttccagtgaagtgcaatcggaaaataagaaagggcttttgttgttaacgg |
29333151 |
T |
|
| Q |
521 |
taataccggtggatgttgcgaatgagagagcattttggttgaatcaagggaattttgatcttgtgtttgggagtatcttggaatggacttatcgggataa |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29333150 |
taataccggtggatgttgcgaatgagagagcattttggttgaatcaagggaattttgatcttgtgtttgggagtatcttggaatggacttatcgggataa |
29333051 |
T |
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| Q |
621 |
ggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccgaatttg |
720 |
Q |
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| T |
29333050 |
ggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccgaatttg |
29332951 |
T |
|
| Q |
721 |
ttgagtattatcgatgaacatggggaagaagaggttttggtggatagggttaagcgtttgggcgatttagttacgttggatgatgatg |
808 |
Q |
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| T |
29332950 |
ttgagtattatcgatgaacatggggaagaagaggttttggtggatagggttaagcgtttgggcgatttagttacgttggatgatgatg |
29332863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 615 - 753
Target Start/End: Complemental strand, 29321862 - 29321724
Alignment:
| Q |
615 |
ggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccg |
714 |
Q |
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|||| |||||||||| | |||||||| || ||||||| |||||||||||||||||||| |||| ||| |||||||||| |||| |||| |||| |||||| |
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| T |
29321862 |
ggatcaggaattgaaagcattggcattcactgcatcactttcgttgatgttattgtcgaaggatcttcagagaacagacgtatacgatattctcttgccg |
29321763 |
T |
|
| Q |
715 |
aatttgttgagtattatcgatgaacatggggaagaagag |
753 |
Q |
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| T |
29321762 |
attttgttgaatattatcaatcaacatggagaagaagag |
29321724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 805
Target Start/End: Complemental strand, 29304676 - 29304486
Alignment:
| Q |
615 |
ggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccg |
714 |
Q |
| |
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|||| |||||||||||| | |||||||| || |||||||||| ||||| |||||||| | || || || || || |||| | ||| ||| |||| | |
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| T |
29304676 |
ggatcaggaattgaaggcactggcatacgattcatcaatttcattgatattattgtcaaatgattttctgaaaaatgaagtatccaattctctcttgcgg |
29304577 |
T |
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| Q |
715 |
aatttgttgagtattatcgatgaacatggggaagaagaggttttggtggatagggttaagcgtttgggcgatttagttacgttggatgatg |
805 |
Q |
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| T |
29304576 |
aatttattgaatatcatcgatcaacacggagaagaagaggttctggtgaataggattaatcgtttgtgggaattagttaaattggatgatg |
29304486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 29322142 - 29322059
Alignment:
| Q |
338 |
attcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttaccggt |
421 |
Q |
| |
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||||||| |||| ||||||||||| |||||||||| ||||||||||||| ||| |||||| | ||||| ||||| ||||||| |
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| T |
29322142 |
attcgctcaaggtagaatctgaagaaattctgtttccttcgctatgcgaaatgatgggtttattcgctgacaggttgtaccggt |
29322059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 29296069 - 29296005
Alignment:
| Q |
152 |
ttttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaa |
216 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||| || || || || ||||||||| |
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| T |
29296069 |
ttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctagaa |
29296005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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