View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2191_low_12 (Length: 252)

Name: NF2191_low_12
Description: NF2191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2191_low_12
NF2191_low_12
[»] chr6 (18 HSPs)
chr6 (19-195)||(25514326-25514487)
chr6 (90-199)||(26059394-26059503)
chr6 (90-199)||(26079364-26079473)
chr6 (1-92)||(25986742-25986833)
chr6 (11-92)||(25486976-25487057)
chr6 (19-92)||(26146574-26146647)
chr6 (26-92)||(26059612-26059678)
chr6 (26-92)||(26079582-26079648)
chr6 (152-199)||(25486859-25486906)
chr6 (152-199)||(26146457-26146504)
chr6 (27-85)||(27661938-27661996)
chr6 (158-199)||(25548458-25548499)
chr6 (26-82)||(27715036-27715092)
chr6 (26-71)||(27079072-27079117)
chr6 (160-199)||(27715139-27715178)
chr6 (22-88)||(25077822-25077887)
chr6 (42-88)||(27423901-27423947)
chr6 (134-177)||(25583153-25583193)
[»] scaffold0349 (2 HSPs)
scaffold0349 (26-82)||(16852-16908)
scaffold0349 (160-199)||(16766-16805)
[»] chr8 (2 HSPs)
chr8 (55-92)||(29270329-29270366)
chr8 (160-199)||(29270443-29270482)
[»] scaffold0003 (1 HSPs)
scaffold0003 (42-88)||(63416-63462)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 25514487 - 25514326
Alignment:
Q  19 tatacaacaaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatgatggaccccaagtctttctattattaggattct 118  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||               |||||||||||||||||||||| |    
T  25514487 tatacaacaaagcacaaacctgcaatgttgagattgagagaataacaagaagacggttaac---------------aagtctttctattattaggattgt 25514403  T
Q  119 tcaatattaaatcctcctccgtgtcactaaaaccctcctcctcctcccctttctctgaaactcccacttccaccaat 195  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25514402 tcaatattacatcctcctccgtgtcactaaaaccctcctcctcctcccctttctctgaaactcccacttccaccaat 25514326  T

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Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 26059503 - 26059394
Alignment:
Q  90 accccaagtctttctattattaggattcttcaatattaaatcctcctccgtgtcactaaaaccctcctcctcctcccctttctctgaaactcccacttcc 189  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26059503 accccaagtctttctattattaggattcttcaatattacatcctcctccgtgtcactaaaaccctcctcctcctcccctttctctgaaactcccacttcc 26059404  T
Q  190 accaatcttt 199  Q
    ||||||||||    
T  26059403 accaatcttt 26059394  T

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Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 26079473 - 26079364
Alignment:
Q  90 accccaagtctttctattattaggattcttcaatattaaatcctcctccgtgtcactaaaaccctcctcctcctcccctttctctgaaactcccacttcc 189  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26079473 accccaagtctttctattattaggattcttcaatattacatcctcctccgtgtcactaaaaccctcctcctcctcccctttctctgaaactcccacttcc 26079374  T
Q  190 accaatcttt 199  Q
    ||||||||||    
T  26079373 accaatcttt 26079364  T

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Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 25986833 - 25986742
Alignment:
Q  1 cagaaattaatcaacatttatacaacaaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatgatggacc 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25986833 cagaaattaatcaacatttatacaacaaagcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacc 25986742  T

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Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 25487057 - 25486976
Alignment:
Q  11 tcaacatttatacaacaaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatgatggacc 92  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25487057 tcaacatttatacaacaaagcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacc 25486976  T

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Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 26146647 - 26146574
Alignment:
Q  19 tatacaacaaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatgatggacc 92  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26146647 tatacaacaaagcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacc 26146574  T

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Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 26059678 - 26059612
Alignment:
Q  26 caaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatgatggacc 92  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26059678 caaagcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacc 26059612  T

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Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 26079648 - 26079582
Alignment:
Q  26 caaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatgatggacc 92  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26079648 caaagcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacc 26079582  T

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Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 25486906 - 25486859
Alignment:
Q  152 cctcctcctcctcccctttctctgaaactcccacttccaccaatcttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25486906 cctcctcctcctcccctttctctgaaactcccacttccaccaatcttt 25486859  T

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Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 26146504 - 26146457
Alignment:
Q  152 cctcctcctcctcccctttctctgaaactcccacttccaccaatcttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26146504 cctcctcctcctcccctttctctgaaactcccacttccaccaatcttt 26146457  T

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Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 27661938 - 27661996
Alignment:
Q  27 aaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatg 85  Q
    ||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||    
T  27661938 aaagcacaaacctgcaaagttgagattgagaggataacaacaagacggttaactttatg 27661996  T

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Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 25548499 - 25548458
Alignment:
Q  158 cctcctcccctttctctgaaactcccacttccaccaatcttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25548499 cctcctcccctttctctgaaactcccacttccaccaatcttt 25548458  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 27715036 - 27715092
Alignment:
Q  26 caaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaacttt 82  Q
    ||||||||||||||| | | |||| ||||||||||||||||||||||| ||||||||    
T  27715036 caaagcacaaacctgtattcttgagattgagagaataacaagaagacgattaacttt 27715092  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 27079117 - 27079072
Alignment:
Q  26 caaagcacaaacctgcaatgttgaaattgagagaataacaagaaga 71  Q
    |||||||||||||| ||||||||| |||||||||||||||| ||||    
T  27079117 caaagcacaaaccttcaatgttgagattgagagaataacaacaaga 27079072  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 27715139 - 27715178
Alignment:
Q  160 tcctcccctttctctgaaactcccacttccaccaatcttt 199  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  27715139 tcctcctctgtctctgaaactcccacttccaccaatcttt 27715178  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 25077887 - 25077822
Alignment:
Q  22 acaacaaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatgatg 88  Q
    |||||||| ||||||||||||||||||  ||| ||| || ||||| |||||||||||||||| ||||    
T  25077887 acaacaaaacacaaacctgcaatgttgtgattaaga-aacaacaacaagacggttaactttacgatg 25077822  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 27423901 - 27423947
Alignment:
Q  42 aatgttgaaattgagagaataacaagaagacggttaactttatgatg 88  Q
    |||||||| |||||||||||||||| ||  |||||||||||||||||    
T  27423901 aatgttgagattgagagaataacaacaaagcggttaactttatgatg 27423947  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 25583193 - 25583153
Alignment:
Q  134 cctccgtgtcactaaaaccctcctcctcctcccctttctctgaa 177  Q
    |||||||||||||||||||||||||   ||||||||||||||||    
T  25583193 cctccgtgtcactaaaaccctcctc---ctcccctttctctgaa 25583153  T

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Target: scaffold0349 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 16908 - 16852
Alignment:
Q  26 caaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaacttt 82  Q
    ||||||||||||||| | | |||| ||||||||||||||||||||||| ||||||||    
T  16908 caaagcacaaacctgtattcttgagattgagagaataacaagaagacgattaacttt 16852  T

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Target: scaffold0349; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 16805 - 16766
Alignment:
Q  160 tcctcccctttctctgaaactcccacttccaccaatcttt 199  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  16805 tcctcctctgtctctgaaactcccacttccaccaatcttt 16766  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 29270329 - 29270366
Alignment:
Q  55 agagaataacaagaagacggttaactttatgatggacc 92  Q
    |||||||||||||||||||||||||||||| |||||||    
T  29270329 agagaataacaagaagacggttaactttataatggacc 29270366  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 29270443 - 29270482
Alignment:
Q  160 tcctcccctttctctgaaactcccacttccaccaatcttt 199  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  29270443 tcctcctctgtctctgaaactcccacttccaccaatcttt 29270482  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 63462 - 63416
Alignment:
Q  42 aatgttgaaattgagagaataacaagaagacggttaactttatgatg 88  Q
    |||||||| |||||||||||||||| ||  |||||||||||||||||    
T  63462 aatgttgagattgagagaataacaacaaagcggttaactttatgatg 63416  T

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