View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2191_low_14 (Length: 238)

Name: NF2191_low_14
Description: NF2191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2191_low_14
NF2191_low_14
[»] chr2 (24 HSPs)
chr2 (14-220)||(12012473-12012679)
chr2 (17-220)||(12006045-12006248)
chr2 (39-213)||(9065527-9065701)
chr2 (14-170)||(11987467-11987620)
chr2 (27-170)||(10335866-10336009)
chr2 (15-170)||(12018859-12019020)
chr2 (39-164)||(9291971-9292096)
chr2 (14-197)||(10371867-10372047)
chr2 (39-157)||(9284180-9284298)
chr2 (37-158)||(9364660-9364781)
chr2 (27-156)||(8573496-8573625)
chr2 (13-158)||(10353117-10353262)
chr2 (14-170)||(9328608-9328764)
chr2 (27-158)||(9061130-9061261)
chr2 (27-158)||(16269111-16269242)
chr2 (39-170)||(9316053-9316178)
chr2 (14-158)||(10347794-10347938)
chr2 (35-170)||(9274551-9274686)
chr2 (14-168)||(7115621-7115775)
chr2 (14-170)||(9320991-9321144)
chr2 (40-123)||(7611974-7612057)
chr2 (105-158)||(8576398-8576451)
chr2 (42-118)||(8579516-8579592)
chr2 (40-123)||(17566107-17566190)
[»] chr1 (4 HSPs)
chr1 (14-170)||(29453281-29453437)
chr1 (14-143)||(29443325-29443454)
chr1 (27-170)||(29423287-29423430)
chr1 (39-158)||(29467769-29467888)
[»] chr7 (3 HSPs)
chr7 (27-149)||(45243721-45243843)
chr7 (30-140)||(45230457-45230570)
chr7 (27-114)||(45237972-45238059)
[»] scaffold0667 (1 HSPs)
scaffold0667 (29-168)||(4495-4634)
[»] chr4 (2 HSPs)
chr4 (27-158)||(26574883-26575014)
chr4 (35-123)||(561252-561340)
[»] chr8 (1 HSPs)
chr8 (39-170)||(41966682-41966813)
[»] chr3 (2 HSPs)
chr3 (27-158)||(37462511-37462645)
chr3 (42-113)||(39427680-39427751)
[»] chr5 (1 HSPs)
chr5 (41-102)||(36224454-36224515)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 12012679 - 12012473
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12012679 caaaggtaaaacgaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 12012580  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  12012579 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaactactattacaaataacctcttcacctcatatttcatcaggaa 12012480  T
Q  214 atggaac 220  Q
    |||||||    
T  12012479 atggaac 12012473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 12006248 - 12006045
Alignment:
Q  17 aggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttga 116  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12006248 aggtaaaacgaaacacgatcccatcaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcacccatacatcaatcttagtagtttga 12006149  T
Q  117 tgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaaatg 216  Q
    | ||||||||||| ||||||||||||||||||||||||||||  |||||||||| | | ||||||||||||||||||||||| ||||||||||||||| |    
T  12006148 taattcacaatcaaacaaagacaccctcccaaatcagcaacattaatttcaaaactccgattacaaataacctcttcacctcttatttcatcaggaaaag 12006049  T
Q  217 gaac 220  Q
    ||||    
T  12006048 gaac 12006045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 39 - 213
Target Start/End: Complemental strand, 9065701 - 9065527
Alignment:
Q  39 accaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaagac 138  Q
    |||||||||||||||||||||||||||||| || | |||||||||||||||||| |  ||||||| |||||||||| || ||||| ||||||||||||||    
T  9065701 accaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaatattagtagtttcataattcaaaatcatacaaagac 9065602  T
Q  139 accctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaa 213  Q
    ||||||||||| |||||||||  |||| |||| |   ||||| | ||||||||||||||| ||||||| ||||||    
T  9065601 accctcccaaaacagcaacagtcatttgaaaactctcattactattaacctcttcacctcttatttcagcaggaa 9065527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 11987620 - 11987467
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    |||||||||||| ||||||||||||| ||| || ||||||||||||||||||||| |||| |||||||||||||||||| | | |||||||||||||       
T  11987620 caaaggtaaaacgaaacacgattccatcaatgtgaaaagtttacaccaactatctctacatccatattctttcatcacccaaatatcaatcttagta--- 11987524  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaa 170  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||  ||||||||||    
T  11987523 tgatgattcacagtcaaacaaagacaccctcccaaaacagcaacatcaatttcaaaa 11987467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 10335866 - 10336009
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaa 126  Q
    ||||||||||  |||||||||||| ||||||||||||||||| |||| |||||||||||||||||| | |||||||| ||||||||||||| |||||||     
T  10335866 aaacacgatttaaccaaagtaaaatgtttacaccaactatctctacagccatattctttcatcacccaaacatcaattttagtagtttgataattcacag 10335965  T
Q  127 tcatacaaagacaccctcccaaatcagcaacagaaatttcaaaa 170  Q
     || ||||||||||||||||||| |||||| |||||||| ||||    
T  10335966 gcaaacaaagacaccctcccaaaacagcaatagaaattttaaaa 10336009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 12019020 - 12018859
Alignment:
Q  15 aaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagttt 114  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| | ||| | ||||||||| |||    
T  12019020 aaaggtaaaacgaaacacgattccatcaaagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaacacctatcttagtaattt 12018921  T
Q  115 ------gatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaa 170  Q
          ||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  12018920 gatttcgataattcataatcaaacaaagacaccctcccaaatcagcaacagcaatttgaaaa 12018859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 9291971 - 9292096
Alignment:
Q  39 accaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaagac 138  Q
    |||||||||||||||||||||||||||||| || ||||||||| |||||||||| | |||||||| |||||||||| || ||||||| ||||||||||||    
T  9291971 accaaagtaaaaagtttacaccaactatctctagaaccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagac 9292070  T
Q  139 accctcccaaatcagcaacagaaatt 164  Q
    || |||| ||| ||||||||| ||||    
T  9292071 actctcctaaaacagcaacagcaatt 9292096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 10371867 - 10372047
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    |||||||||| | ||||  ||||  |||||||||||||||||||||||||||||| || |||||||||||||||||||| | | |||||  |||||||||    
T  10371867 caaaggtaaacccaaacttgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagtt 10371966  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacct 197  Q
    | || || |||| ||||||||||||||||||| ||| ||||||||  |||||||||   |||||||| | |||| |||||||||    
T  10371967 ttataatccacagtcatacaaagacaccctcctaaaacagcaacacgaatttcaaa---actattactattaacttcttcacct 10372047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 9284298 - 9284180
Alignment:
Q  39 accaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaagac 138  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||||||||| | || ||||| ||||||||||||| |||||||||||||| |||||    
T  9284298 accaaagtaaaaattttacaccaactatctctagaaccatattctttcatcacccaaacgtcaattttagtagtttgataattcacaatcatactaagac 9284199  T
Q  139 accctcccaaatcagcaac 157  Q
    | ||||| ||| |||||||    
T  9284198 aacctcctaaaacagcaac 9284180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 9364660 - 9364781
Alignment:
Q  37 ccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaag 136  Q
    ||||||||||||| | ||||||||||||||||||  | |||||||||||||||||| | |||||||| | ||||||||||| |||||||||||||| |||    
T  9364660 ccaccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcatactaag 9364759  T
Q  137 acaccctcccaaatcagcaaca 158  Q
    ||||||||||||| | ||||||    
T  9364760 acaccctcccaaaaccgcaaca 9364781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 8573625 - 8573496
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaa 126  Q
    ||||||||||  || ||||||||||||||||||||||||||| || |||||||||||||||||||| | |||||||| | ||| |||| || |||||||     
T  8573625 aaacacgatttaacgaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcaatttcagtggtttcataattcacag 8573526  T
Q  127 tcatacaaagacaccctcccaaatcagcaa 156  Q
     ||||||||||||||| |||||| ||||||    
T  8573525 acatacaaagacacccacccaaaacagcaa 8573496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 10353117 - 10353262
Alignment:
Q  13 gcaaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagt 112  Q
    ||||||||||| | ||| | ||||  |||| ||||||||||||||||||||| ||| |||| |||||||||||||||||| | |||||||| ||||||      
T  10353117 gcaaaggtaaatcgaaagaagatttaaccacagtaaaaagtttacaccaactctctctacatccatattctttcatcacccaaacatcaattttagtatc 10353216  T
Q  113 ttgatgattcacaatcatacaaagacaccctcccaaatcagcaaca 158  Q
    || || || |||||||||||||||||||||||| ||| ||||||||    
T  10353217 tttataatccacaatcatacaaagacaccctcctaaagcagcaaca 10353262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 9328608 - 9328764
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    ||||||||||   ||||||||||  |||| ||||||||||||||||||||||||| || | ||||||| |||||||||| | |||||||| | |||||||    
T  9328608 caaaggtaaatggaaacacgatttaaccatagtaaaaagtttacaccaactatctctatatccatattgtttcatcacccaaacatcaatttcagtagtt 9328707  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaa 170  Q
    | || ||||| | |||| |||||||||||||||||| || |||||  ||||||||||    
T  9328708 tcataattcaaagtcatgcaaagacaccctcccaaaacatcaacatcaatttcaaaa 9328764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 9061261 - 9061130
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaa 126  Q
    ||||||||||  |||||||||||||||||||||||||||||| || | ||||| |||||||||||| | |||||||| ||||||| || || |||||||     
T  9061261 aaacacgatttaaccaaagtaaaaagtttacaccaactatctctagatccatagtctttcatcacccaaacatcaattttagtagcttcataattcacag 9061162  T
Q  127 tcatacaaagacaccctcccaaatcagcaaca 158  Q
     ||| ||||||||||| |||||| ||||||||    
T  9061161 acatgcaaagacacccacccaaaacagcaaca 9061130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 16269111 - 16269242
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaa 126  Q
    ||||||||||  ||||| ||||||||||| |||||||||||| || | ||||| |||||||||||| | |||||||| |||||||||| || |||||||     
T  16269111 aaacacgatttaaccaaggtaaaaagtttgcaccaactatctctatatccatactctttcatcacccaaacatcaattttagtagtttcataattcacag 16269210  T
Q  127 tcatacaaagacaccctcccaaatcagcaaca 158  Q
    | ||||||||||| ||||||||| ||||||||    
T  16269211 ttatacaaagacatcctcccaaaacagcaaca 16269242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 9316053 - 9316178
Alignment:
Q  39 accaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaagac 138  Q
    |||||||||||||||||||||||||||  |      ||||| |||||||||||| | |||||| | ||||||||||||| ||||| ||||||||||||||    
T  9316053 accaaagtaaaaagtttacaccaactagat------ccatagtctttcatcacccaaacatcagttttagtagtttgataattcaaaatcatacaaagac 9316146  T
Q  139 accctcccaaatcagcaacagaaatttcaaaa 170  Q
    ||||||||||| ||||||||| ||||| ||||    
T  9316147 accctcccaaaacagcaacagcaatttgaaaa 9316178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 10347794 - 10347938
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    |||||||||| | |||||||| ||  ||| ||||||||||||||||||||||||| |||| |||||||||||||| ||| | |||||||| ||||||  |    
T  10347794 caaaggtaaatcgaaacacgactcagccatagtaaaaagtttacaccaactatctctacatccatattctttcatgacccaaacatcaattttagtatct 10347893  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaaca 158  Q
    | || ||  ||| | ||||||||||||||||||||| ||||||||    
T  10347894 ttataatcgacagtgatacaaagacaccctcccaaaacagcaaca 10347938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 9274551 - 9274686
Alignment:
Q  35 ttccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaa 134  Q
    ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||| | || ||||  | |||| || ||| ||||| | ||||||||    
T  9274551 ttccatcaaagtaaaaagtttacaccaactatctgtagaaccatattctttcatcacccaaacttcaaattcagtatttcgataattcaaagtcatacaa 9274650  T
Q  135 agacaccctcccaaatcagcaacagaaatttcaaaa 170  Q
    ||||||||| ||||| || |||||  ||||||||||    
T  9274651 agacacccttccaaaacaacaacattaatttcaaaa 9274686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 7115775 - 7115621
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    ||||| |||| | |||||||| |  ||||| ||||||||||||||||| || ||| || | ||||||| |||||||||| | |||||  | |||||||||    
T  7115775 caaagataaatcgaaacacgaattaaccaatgtaaaaagtttacaccagctgtctctagatccatattgtttcatcacccaaacatctgttttagtagtt 7115676  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaa 168  Q
      || ||||||||||||||||||||||||||||||| |||||| ||||| |||||    
T  7115675 ctataattcacaatcatacaaagacaccctcccaaaacagcaatagaaagttcaa 7115621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 9320991 - 9321144
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    |||||||||| |  |||||||||  |||| ||||||||||||||||||||||||| || |||||||||||||||||||| | |||||||  || ||||||    
T  9320991 caaaggtaaatcgtaacacgatttaaccatagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcaacttttgtagtt 9321090  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaa 170  Q
    |  | ||    | |||| |||||||||||||||||| || |||||  ||||||||||    
T  9321091 tcgtaat---aagtcatgcaaagacaccctcccaaaacatcaacatcaatttcaaaa 9321144  T

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Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 7611974 - 7612057
Alignment:
Q  40 ccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattca 123  Q
    |||||||||| | ||||||||||||||||||  | |||||||||||||||||| | ||||||| |||| |||||| || |||||    
T  7611974 ccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaaacttaatagtttcataattca 7612057  T

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Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 8576451 - 8576398
Alignment:
Q  105 ttagtagtttgatgattcacaatcatacaaagacaccctcccaaatcagcaaca 158  Q
    |||||||||| || ||||||| ||||||||||||||||||| ||| ||||||||    
T  8576451 ttagtagtttcataattcacactcatacaaagacaccctccaaaaacagcaaca 8576398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 8579592 - 8579516
Alignment:
Q  42 aaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatg 118  Q
    |||||||| | |||||||||||||||| || | ||||||| |||||||||| | || |||| ||||||||| |||||    
T  8579592 aaagtaaacaatttacaccaactatctctaaatccatattttttcatcacccaaacctcaaccttagtagtgtgatg 8579516  T

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Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 17566190 - 17566107
Alignment:
Q  40 ccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattca 123  Q
    |||| ||||| | |||||||||| ||||| || | ||||||||||| |||||| | |||||||  ||||||||||||| |||||    
T  17566190 ccaaggtaaacaatttacaccaattatctctaaatccatattctttaatcacccaaacatcaacattagtagtttgataattca 17566107  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 29453437 - 29453281
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    |||||||||||  ||||| |||||| ||||||||||||||| |||||| |||||| |||| |||||||||||||||||| | |||||||| |||  ||||    
T  29453437 caaaggtaaaatgaaacatgattccgccaaagtaaaaagttcacaccagctatctctacatccatattctttcatcacccaaacatcaattttaacagtt 29453338  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaa 170  Q
    |||| ||||||||||||||||||||||||| ||||| | ||||||  ||||||||||    
T  29453337 tgataattcacaatcatacaaagacacccttccaaaaccgcaacaccaatttcaaaa 29453281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 29443454 - 29443325
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    ||||||||||   |||||||||||  |||||||||||||||||||||| |||||| |||| |||||||||||||||||| | |||||||| |||| ||||    
T  29443454 caaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcacccaaacatcaattttagcagtt 29443355  T
Q  114 tgatgattcacaatcatacaaagacaccct 143  Q
    |||| |||||||||||||||||||||||||    
T  29443354 tgataattcacaatcatacaaagacaccct 29443325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 29423287 - 29423430
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaa 126  Q
    |||||||||||  |||||||||||||||||||||| |||||| |||| |||||||||||||||| | | |||||||| |||  |||||||| |||||||     
T  29423287 aaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcagccaaacatcaattttaacagtttgataattcacag 29423386  T
Q  127 tcatacaaagacaccctcccaaatcagcaacagaaatttcaaaa 170  Q
    |||||||||| |||||| ||| | | ||||||  ||||||||||    
T  29423387 tcatacaaaggcacccttccagaaccgcaacaccaatttcaaaa 29423430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 29467888 - 29467769
Alignment:
Q  39 accaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaagac 138  Q
    ||||||||||||||||||| |||||||||| |||| |||||||||||||||| | | |||||||| ||| ||||||||| |||||||||||   ||||||    
T  29467888 accaaagtaaaaagtttacgccaactatctctacatccatattctttcatcaaccaaacatcaattttactagtttgataattcacaatcaactaaagac 29467789  T
Q  139 accctcccaaatcagcaaca 158  Q
    ||||||||||| | ||||||    
T  29467788 accctcccaaaaccgcaaca 29467769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 45243721 - 45243843
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaa 126  Q
    ||||||||||  |||||||||||||||||||||||| ||||| || |||||||||||||||||||| | |||||||| | | ||||||||| ||||||||    
T  45243721 aaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagaaccatattctttcatcacccaaacatcaatttcattagtttgataattcacaa 45243820  T
Q  127 tcatacaaagacaccctcccaaa 149  Q
    |||||||||||||| ||||||||    
T  45243821 tcatacaaagacactctcccaaa 45243843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 45230457 - 45230570
Alignment:
Q  30 cacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaata---catcaatcttagtagtttgatgattcacaa 126  Q
    |||||||  |||||||||||||||||||||||||||||| || |||||||||||||||||||| | |   ||||||| ||| ||||||||| ||||||||    
T  45230457 cacgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcatcaattttattagtttgataattcacaa 45230556  T
Q  127 tcatacaaagacac 140  Q
    ||||||||||||||    
T  45230557 tcatacaaagacac 45230570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 45237972 - 45238059
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagttt 114  Q
    ||||||||||| || ||||||||||||||||||||||||||| || | |||||||||||||||||| | |||||||| | ||||||||    
T  45237972 aaacacgattcaactaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaacatcaatttgagtagttt 45238059  T

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Target: scaffold0667 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 4495 - 4634
Alignment:
Q  29 acacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatc 128  Q
    |||||||| || || |||||||||||||||||||||||||||  | ||||||| |||||||||| | |||||||| |||||||||| || ||||||| ||    
T  4495 acacgatttcatcatagtaaaaagtttacaccaactatcttttaatccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtc 4594  T
Q  129 atacaaagacaccctcccaaatcagcaacagaaatttcaa 168  Q
    ||||||||||| ||||||||| ||||||||  ||||||||    
T  4595 atacaaagacatcctcccaaagcagcaacatcaatttcaa 4634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 26574883 - 26575014
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaa 126  Q
    ||||||||||  |||| ||||||||||||||||||||||||| |||| |||||||||||||||||| | |||||||| ||||||  || || || ||||     
T  26574883 aaacacgatttaaccacagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaacatcaattttagtatctttataatccacag 26574982  T
Q  127 tcatacaaagacaccctcccaaatcagcaaca 158  Q
    ||||||||||||||||||| ||||||||||||    
T  26574983 tcatacaaagacaccctcctaaatcagcaaca 26575014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 561252 - 561340
Alignment:
Q  35 ttccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattca 123  Q
    |||| |||||||||| | |  ||||||||||||| || | |||||||||||||| ||| | ||||||| ||||||||||| || |||||    
T  561252 ttcctccaaagtaaacaatacacaccaactatctctaaatccatattctttcattacccaaacatcaaccttagtagttttattattca 561340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 41966813 - 41966682
Alignment:
Q  39 accaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaagac 138  Q
    ||||||||||||||||||||||| |||||| || | | |||||||||||||||| | |||||||  |   ||||||||| || ||||| |||||||||||    
T  41966813 accaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcgctagtttgataatccacaaccatacaaagac 41966714  T
Q  139 accctcccaaatcagcaacagaaatttcaaaa 170  Q
    ||||||||||| ||| ||||||||||||||||    
T  41966713 accctcccaaaacagaaacagaaatttcaaaa 41966682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 37462511 - 37462645
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtag---tttgatgattca 123  Q
    ||||||||||   ||| |||| |||||||||||||||||||| || | |||||||||||||||||| | |||||||  |||||||   ||| || |||||    
T  37462511 aaacacgatttatccacagtacaaagtttacaccaactatctctagatccatattctttcatcacccaaacatcaaatttagtagtttttttataattca 37462610  T
Q  124 caatcatacaaagacaccctcccaaatcagcaaca 158  Q
    || ||||||||||||| ||||||||| ||||||||    
T  37462611 cagtcatacaaagacagcctcccaaaacagcaaca 37462645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 39427680 - 39427751
Alignment:
Q  42 aaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    |||||||| | |||||||||||||| | || | |||||||||||||||||| | ||||||| |||| |||||    
T  39427680 aaagtaaacaatttacaccaactatatctatatccatattctttcatcacccaaacatcaaacttattagtt 39427751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 36224454 - 36224515
Alignment:
Q  41 caaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaa 102  Q
    ||||||||| | |||||||||||||||| || | |||||||||||||||||| | |||||||    
T  36224454 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 36224515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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