View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2191_low_16 (Length: 213)
Name: NF2191_low_16
Description: NF2191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2191_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 6186645 - 6186844
Alignment:
| Q |
4 |
ttgaattctctaactccgttatcagtctttgtgttaccggtgaaatatcgaatcaataaaacaaccaagactaaaaacgcgacaaccaaaccaacttttc |
103 |
Q |
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| T |
6186645 |
ttgaattctctaactccggcatcagtctttgtattcccggtgaaatatcgaaccaagagaacaaccaggactaaaaacgcgacaaccaaaccaacttttc |
6186744 |
T |
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| Q |
104 |
cgatcgatgatgttagcttattcaaccttgtttgcaaaggtgtttcctcgtcgatgtcattgcttatcgaactcatcatttgtccccatgttgtgttcat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186745 |
cgatcgatgatgttagcttattcaaccttgtttgcaaaggtgtttcctcatcgatgtcattgcttatcgaactcatcatttgtccccatgttgtgttcat |
6186844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 4243586 - 4243788
Alignment:
| Q |
1 |
ccgttgaattctctaactccgttatcagtctttgtgttaccggtgaaatatcgaatcaataaaacaaccaagactaaaaacgcgacaaccaaaccaactt |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| | ||||||||| |||||| |||||||||| | |
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| T |
4243586 |
ccgttgaactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacct |
4243685 |
T |
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| Q |
101 |
ttccgatcgatgatgttagcttattcaaccttgtttgcaaaggtgtttcctcgtcgatgtcattgcttatcgaactcatcatttgtccccatgttgtgtt |
200 |
Q |
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||||||| || ||||| || ||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4243686 |
ttccgattgaggatgtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccatgttgtgtt |
4243785 |
T |
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| Q |
201 |
cat |
203 |
Q |
| |
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||| |
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| T |
4243786 |
cat |
4243788 |
T |
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