View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2191_low_7 (Length: 298)
Name: NF2191_low_7
Description: NF2191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2191_low_7 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 102 - 287
Target Start/End: Complemental strand, 28240907 - 28240722
Alignment:
| Q |
102 |
ttggaagaggatttgaaggattggagctcttgtccatcgattggcagctcactgtcatatttgttaaggtgggtactattgagtaccctcatgctcaata |
201 |
Q |
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| T |
28240907 |
ttggaagaggatttgaaggattggagctcttgtccatcgattggcagctcactgtcatatttgttaaggtgggtactattgagtaccctcatgctcaata |
28240808 |
T |
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| Q |
202 |
gtattcacattagctaaaaatgaccaagataattaatttgtgttccacctttattttctgttcaagatcgatcattattgattcat |
287 |
Q |
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| T |
28240807 |
gtattcacataagctaaaaatgaccaagataattaatttgtgttccacctttattttctgttcaagaccgatcattattgattcat |
28240722 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 269
Target Start/End: Complemental strand, 30209272 - 30209179
Alignment:
| Q |
175 |
tactattgagtaccctcatgctcaatagtattcacattagctaaaaatgaccaagataattaatttgtgttccacctttattttctgttcaagat |
269 |
Q |
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| T |
30209272 |
tactatcgggtaccctcacactcaatagtatttacaacagctaaaac-gaccaagatgattaacgtgtgttccacctttactctctgttcaagat |
30209179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 4054270 - 4054206
Alignment:
| Q |
168 |
aggtgggtactattgagtaccctcatgctcaatagtattcacat--tagctaaaaatgaccaaga |
230 |
Q |
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| T |
4054270 |
aggtggatactgttgagtaccctcacgctcaatagtattcacatcacagctaaaaataaccaaga |
4054206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 20872026 - 20871957
Alignment:
| Q |
176 |
actattgagtaccctcatgctcaatagtattcacattagctaaaaatgaccaagataattaatttgtgttcc |
247 |
Q |
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| T |
20872026 |
actattgagtcccatcaagctcaatagtattcacatcagct-aaaatga-caagataattgatgtgtgttcc |
20871957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 46129532 - 46129594
Alignment:
| Q |
175 |
tactattgagtaccctcatgctcaatagtattcacattagctaaaaatgaccaagataattaat |
238 |
Q |
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| T |
46129532 |
tactattaagtaccctcacactcaatagtattcaccttggct-aaaatgactaagataattaat |
46129594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 337565 - 337601
Alignment:
| Q |
218 |
aaaatgaccaagataattaatttgtgttccaccttta |
254 |
Q |
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| T |
337565 |
aaaacgaccaagataattaatatgtgttccaccttta |
337601 |
T |
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