View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2192_high_3 (Length: 259)

Name: NF2192_high_3
Description: NF2192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2192_high_3
NF2192_high_3
[»] chr1 (2 HSPs)
chr1 (19-259)||(7581196-7581436)
chr1 (19-259)||(7099810-7100050)
[»] chr5 (18 HSPs)
chr5 (19-259)||(30206911-30207151)
chr5 (24-259)||(17983296-17983522)
chr5 (19-259)||(30521102-30521342)
chr5 (19-259)||(30561442-30561682)
chr5 (19-204)||(30241858-30242043)
chr5 (24-259)||(30750032-30750267)
chr5 (19-259)||(30475764-30476004)
chr5 (111-259)||(30483790-30483938)
chr5 (19-259)||(30060758-30060998)
chr5 (19-211)||(30400511-30400703)
chr5 (111-259)||(30338094-30338242)
chr5 (111-259)||(30436205-30436353)
chr5 (19-259)||(29853700-29853940)
chr5 (19-259)||(29872563-29872803)
chr5 (111-259)||(30712994-30713142)
chr5 (111-232)||(30676857-30676978)
chr5 (166-259)||(30330779-30330872)
chr5 (19-97)||(17418070-17418148)
[»] chr4 (3 HSPs)
chr4 (19-225)||(13617019-13617224)
chr4 (27-247)||(52352360-52352580)
chr4 (19-259)||(20296059-20296299)
[»] chr7 (1 HSPs)
chr7 (19-259)||(26707721-26707961)
[»] scaffold0511 (1 HSPs)
scaffold0511 (52-97)||(9295-9340)
[»] scaffold0230 (1 HSPs)
scaffold0230 (52-97)||(4615-4660)
[»] chr6 (3 HSPs)
chr6 (52-97)||(18873364-18873409)
chr6 (52-89)||(16797119-16797156)
chr6 (52-97)||(18806370-18806415)
[»] chr3 (3 HSPs)
chr3 (115-259)||(25293497-25293641)
chr3 (30-97)||(38939511-38939578)
chr3 (19-85)||(25293418-25293484)
[»] scaffold0133 (2 HSPs)
scaffold0133 (24-88)||(8458-8522)
scaffold0133 (52-88)||(12800-12836)
[»] chr8 (1 HSPs)
chr8 (57-97)||(13378033-13378073)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 7581196 - 7581436
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  7581196 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtaaaaaaatgtgcgggattgcc 7581295  T
Q  119 tcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgag 218  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7581296 tcttgcagcacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgag 7581395  T
Q  219 aattctactttgccagctctgaggttgagctactttcattt 259  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  7581396 aattctactttgccagctctgagattgagctactttcattt 7581436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 7100050 - 7099810
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcc 118  Q
    |||| ||||||||||||||||||||||||||| | ||||||||| |||| |||||||||  ||||||||||||||||||       ||||  ||||||||    
T  7100050 ggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagtaaaaaagtgtggaggattgcc 7099951  T
Q  119 tcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgag 218  Q
    ||||||| |||||||||| |||||||||||||| ||||| ||||||||||| | |||||| |||||||||||||| ||| | |||| ||||||||| |||    
T  7099950 tcttgcagcacaagcattagggtgtctaatgcattcaagaagtgaagaaaaagcatggttagaaattaaagagagtgagatctgggctttaccgcacgag 7099851  T
Q  219 aattctactttgccagctctgaggttgagctactttcattt 259  Q
    ||||||| |||||||||| |||||||||||||||| |||||    
T  7099850 aattctattttgccagctttgaggttgagctacttccattt 7099810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 30207151 - 30206911
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcc 118  Q
    |||| ||||||||||||||||||||||||||  ||||||||||| ||||||||||||||| |||||| |||||||||||       ||||  ||||||||    
T  30207151 ggttgttgttcaaacaatatgcatttggacaaaatagagaagagcgtgcagagcttgtggaaataggaaaggagatagtaaagaaatgtgatggattgcc 30207052  T
Q  119 tcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgag 218  Q
    ||||||| |||||||||||||  ||||||||   ||||||| ||||||||| |||||| |||||||||||||||| || ||||||| |||||| ||||||    
T  30207051 tcttgcagcacaagcattgggaggtctaatgagttcaaggaatgaagaaaaagaatggcttgaaattaaagagagtgaactttgggctttaccacatgag 30206952  T
Q  219 aattctactttgccagctctgaggttgagctactttcattt 259  Q
    |||| || ||| || ||| ||||||||||||||||||||||    
T  30206951 aattatattttacctgctttgaggttgagctactttcattt 30206911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 17983522 - 17983296
Alignment:
Q  24 ttgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcctcttg 123  Q
    ||||||||||||||||||||||| |||||||||||||||  |   |||||||||  ||||||||||||||||||       ||||  |||||||||||||    
T  17983522 ttgttcaaacaatatgcatttgggcatgatagagaagagcctttcgagcttgtgaaaataggcaaggagatagtaaaaaagtgtggaggattgcctcttg 17983423  T
Q  124 caacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgagaattc 223  Q
    || || ||||||| ||||| |||||||| ||||         |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  17983422 cagcaaaagcattagggtgcctaatgcattcaa---------aaaaggaatggtttgaaattaaagagagcgagctctgggctttaccgcatgagaattc 17983332  T
Q  224 tactttgccagctctgaggttgagctactttcattt 259  Q
    || ||| |||||||| ||||||||||||||||||||    
T  17983331 tattttcccagctctaaggttgagctactttcattt 17983296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 30521102 - 30521342
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcc 118  Q
    |||| ||||||||||||||||||||| |||||||||||||  ||    | ||||||||  ||||||| || ||||||||       |||| |||||||||    
T  30521102 ggttgttgttcaaacaatatgcatttcgacatgatagagagcagcagactgagcttgtcacaataggaaaagagatagtaaagaagtgtgggggattgcc 30521201  T
Q  119 tcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgag 218  Q
    ||||||| |||||||||||||  | ||||||  ||||||||||| |||||| |||||| ||||||||||||| |||  | |||||  ||||||| |||||    
T  30521202 tcttgcagcacaagcattgggaggcctaatgtgctcaaggagtggagaaaaagaatggcttgaaattaaagatagcaggatttggtctttaccgaatgag 30521301  T
Q  219 aattctactttgccagctctgaggttgagctactttcattt 259  Q
    ||||||| |||||| ||| | ||||||||||||||||||||    
T  30521302 aattctattttgcctgctttaaggttgagctactttcattt 30521342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 30561442 - 30561682
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcc 118  Q
    |||| ||||||||||||||||||||| |||||||||||||  ||    | ||||||||  ||||||| || ||||||||       |||| |||||||||    
T  30561442 ggttgttgttcaaacaatatgcatttcgacatgatagagagcagcagactgagcttgtcacaataggaaaagagatagtaaagaagtgtgggggattgcc 30561541  T
Q  119 tcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgag 218  Q
    ||||||| |||||||||||||  | ||||||  ||||||||||| |||||| |||||| ||||||||||||| |||  | |||||  ||||||| |||||    
T  30561542 tcttgcagcacaagcattgggaggcctaatgtgctcaaggagtggagaaaaagaatggcttgaaattaaagatagcaggatttggtctttaccgaatgag 30561641  T
Q  219 aattctactttgccagctctgaggttgagctactttcattt 259  Q
    ||||||| |||||| ||| | ||||||||||||||||||||    
T  30561642 aattctattttgcctgctttaaggttgagctactttcattt 30561682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 30241858 - 30242043
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcc 118  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||| || ||||||||  |||||| |||||||| ||       |||   ||||||||    
T  30241858 ggttgttgttcaaacaatatgcatttggacattatagagaagagagtacaaagcttgtgaaaataggaaaggagattgtaaagaaatgtaatggattgcc 30241957  T
Q  119 tcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttggg 204  Q
    ||||||| |  ||||||||||  || |||||  |||||||| ||||||| |||||||| ||||||||||||| |||||||||||||    
T  30241958 tcttgcagcgaaagcattgggaggtttaatgagctcaaggaatgaagaagaggaatggcttgaaattaaagatagcgagctttggg 30242043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 30750267 - 30750032
Alignment:
Q  24 ttgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcctcttg 123  Q
    |||||| |||||||||||||||||||| | | ||||||| |||| || || ||||||||||| |||||||||||       |||   |||||||||||||    
T  30750267 ttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagtaaagaaatgtaatggattgcctcttg 30750168  T
Q  124 caacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgagaattc 223  Q
    || || ||||||||||  || ||||| |||||||||  || |||||||||||| || |||||||||| || || |||||||||||| |  |||| |||||    
T  30750167 cagcaaaagcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagatagtgaactttgggatttatcagatgaaaattc 30750068  T
Q  224 tactttgccagctctgaggttgagctactttcattt 259  Q
     | |||||| ||| |||||||||| |||||| ||||    
T  30750067 cattttgcctgctttgaggttgagttacttttattt 30750032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 30476004 - 30475764
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcc 118  Q
    |||| ||||| | ||||||||||||||||  || | |||||||  | | ||||||||| |||||||| |||| ||||||       ||||  ||||||||    
T  30476004 ggttgttgtttagacaatatgcatttggatgtgctggagaagaacgggaagagcttgtagcaataggtaaggcgatagtaaagaagtgtggaggattgcc 30475905  T
Q  119 tcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgag 218  Q
    ||||||| |||||||||||||  ||||||||| |||||||||||| ||||| |||||| ||||||||||||| ||  | || |||   |||||  |||||    
T  30475904 tcttgcagcacaagcattgggaggtctaatgcgctcaaggagtgatgaaaatgaatggcttgaaattaaagacagtaatctctggaccttaccatatgag 30475805  T
Q  219 aattctactttgccagctctgaggttgagctactttcattt 259  Q
    ||||| | |||||||||  ||||||| ||||||||||||||    
T  30475804 aattccattttgccagccttgaggttaagctactttcattt 30475764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 259
Target Start/End: Complemental strand, 30483938 - 30483790
Alignment:
Q  111 ggattgcctcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttac 210  Q
    ||||||||||||||| || ||||||||||| || |||||  ||||| || |||||||||||||||| |||| |||||||| || ||||||||||||||||    
T  30483938 ggattgcctcttgcagcaaaagcattggggggtttaatggtctcaatgaatgaagaaaaggaatggcttgatattaaagacagtgagctttgggatttac 30483839  T
Q  211 cgcatgagaattctactttgccagctctgaggttgagctactttcattt 259  Q
    | ||||| || |||| ||| || ||| |||||||||| |||||| ||||    
T  30483838 cacatgaaaaatctattttacctgctttgaggttgagttacttttattt 30483790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 30060998 - 30060758
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcc 118  Q
    |||| |||||| |||||||||||||||||||| | | ||||||| |||| || || ||||||||||| |||||||||||       ||    ||||||||    
T  30060998 ggttgttgttcgaacaatatgcatttggacatcacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagtaaagaaatgcaatggattgcc 30060899  T
Q  119 tcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgag 218  Q
    ||||||| || || |||||||  || ||||| |||||||||  || |||||||||||| || |||||||||| || || |||||||||||| |  ||||     
T  30060898 tcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaa 30060799  T
Q  219 aattctactttgccagctctgaggttgagctactttcattt 259  Q
    ||||| | |||||| ||| |||||||||| |||||| ||||    
T  30060798 aattccattttgcctgctttgaggttgagttacttttattt 30060758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 30400703 - 30400511
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcc 118  Q
    |||| ||||||||| |||||||||| |||||| ||||||||||| ||||||| ||||| |||||||| |||||||||||       |||   ||||||||    
T  30400703 ggttgttgttcaaagaatatgcattgggacattatagagaagagcgtgcagaacttgtagcaataggaaaggagatagtaaagaaatgtaatggattgcc 30400604  T
Q  119 tcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttacc 211  Q
    ||||||| || ||||||||||  || | |||  |||||||| || ||||||||||||| |||| |||||||| |  |||||||||| ||||||    
T  30400603 tcttgcagcaaaagcattgggaggtttgatgagctcaaggaatggagaaaaggaatggcttgatattaaagacactgagctttgggctttacc 30400511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 259
Target Start/End: Original strand, 30338094 - 30338242
Alignment:
Q  111 ggattgcctcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttac 210  Q
    ||||||||||||||| || ||||||||||| || |||||  ||||| || |||||||||||||||| |||| |||||||| || ||||||||||||||||    
T  30338094 ggattgcctcttgcagcaaaagcattggggggtttaatggtctcaatgaatgaagaaaaggaatggcttgatattaaagacagtgagctttgggatttac 30338193  T
Q  211 cgcatgagaattctactttgccagctctgaggttgagctactttcattt 259  Q
    | ||||| || |||| ||| || ||| |||| ||||| |||||| ||||    
T  30338194 cacatgaaaaatctattttacctgctttgagtttgagttacttttattt 30338242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 259
Target Start/End: Complemental strand, 30436353 - 30436205
Alignment:
Q  111 ggattgcctcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttac 210  Q
    ||||||||||||||| || ||||||||||| || | |||  |||||||| |||||||||||||||| |||| |||||||| || |||||||||| |||||    
T  30436353 ggattgcctcttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagaaaaggaatggcttgatattaaagacagtgagctttgggctttac 30436254  T
Q  211 cgcatgagaattctactttgccagctctgaggttgagctactttcattt 259  Q
    | || || ||||||| |||||| ||| |||| ||||| |||||| ||||    
T  30436253 cacaagaaaattctattttgcccgctttgagattgagttacttttattt 30436205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 29853940 - 29853700
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcc 118  Q
    |||| ||||||||| |||||||||||||| ||   |||||||||  | || ||||||||| |||||| |||||||| ||       |||   ||||||||    
T  29853940 ggttgttgttcaaagaatatgcatttggatatttcagagaagagcatacaaagcttgtggaaataggaaaggagattgtaaagaaatgtaatggattgcc 29853841  T
Q  119 tcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgag 218  Q
    ||||||| || || |||||||  || | |||  |||||||| |||||||||||||||| |||| |||||||| || |||||||||| |||||| || ||     
T  29853840 tcttgcagcaaaaacattgggaggtttgatgagctcaaggaatgaagaaaaggaatggcttgatattaaagacagtgagctttgggctttaccacaagaa 29853741  T
Q  219 aattctactttgccagctctgaggttgagctactttcattt 259  Q
    ||||||| |||||  ||| |||||||||| |||||| ||||    
T  29853740 aattctattttgcttgctttgaggttgagttacttttattt 29853700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 29872803 - 29872563
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcc 118  Q
    |||| ||||||||| |||||||||||||| || | |||||||||  | || ||||| ||| |||||| |||||||| ||       |||   ||||||||    
T  29872803 ggttgttgttcaaagaatatgcatttggatattacagagaagagcatacaaagcttatggaaataggaaaggagattgtaaagaaatgtaatggattgcc 29872704  T
Q  119 tcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgag 218  Q
    ||||||| || ||||||||||  || | |||  |||||||| |||||||||||||||| |||| ||||| || || |||||||||| |||| |||| ||     
T  29872703 tcttgcagcaaaagcattgggaggtttgatgagctcaaggaatgaagaaaaggaatggcttgatattaaggacagtgagctttgggctttatcgcaagaa 29872604  T
Q  219 aattctactttgccagctctgaggttgagctactttcattt 259  Q
    ||||||| |||||  ||| |||||||||| |||||| ||||    
T  29872603 aattctattttgcttgctttgaggttgagttacttttattt 29872563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 259
Target Start/End: Original strand, 30712994 - 30713142
Alignment:
Q  111 ggattgcctcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttac 210  Q
    |||||||| |||||| || ||||||||||| || | |||  |||||||| ||||||||| |||||| |||| |||||||| || |||||||||| |||||    
T  30712994 ggattgccacttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagaaaatgaatggcttgatattaaagacagtgagctttgggctttac 30713093  T
Q  211 cgcatgagaattctactttgccagctctgaggttgagctactttcattt 259  Q
    | || || ||||||| |||||| ||| ||||| |||| |||||| ||||    
T  30713094 cacaagaaaattctattttgcctgctttgaggctgagttacttttattt 30713142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 232
Target Start/End: Original strand, 30676857 - 30676978
Alignment:
Q  111 ggattgcctcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttac 210  Q
    ||||||||||||||| || ||||||||||| || | |||  |||||||| |||||| ||||||||| |||| |||||||| || |||||||||| |||||    
T  30676857 ggattgcctcttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagagaaggaatggcttgatattaaagacagtgagctttgggctttac 30676956  T
Q  211 cgcatgagaattctactttgcc 232  Q
    | ||  | ||||||| ||||||    
T  30676957 cacaaaaaaattctattttgcc 30676978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 259
Target Start/End: Original strand, 30330779 - 30330872
Alignment:
Q  166 aaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgagaattctactttgccagctctgaggttgagctactttcattt 259  Q
    ||||||||||  ||||||||||||||||||| ||||||| |||||  ||| |  ||| || |||| | | | ||||||||||||||||||||||    
T  30330779 aaaaggaatgacttgaaattaaagagagcgaactttgggttttacaacataatgattatagtttgtctgatttgaggttgagctactttcattt 30330872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 17418070 - 17418148
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagt 97  Q
    |||| |||||||||||||||||||||||| |||| | ||||||| | |  || |||||  ||||||||||||| |||||    
T  17418070 ggttgttgttcaaacaatatgcatttggaaatgacaaagaagagcgcgaggaacttgtcccaataggcaaggatatagt 17418148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 13617224 - 13617019
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcc 118  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||| ||||||| |||||||||| |||||||||||       ||||  ||||||||    
T  13617224 ggttattgttcaaacaatatgcattcgaacatgatagagaagagtgtgtagagctt-tggcaataggaaaggagatagttaaaaagtgtggaggattgcc 13617126  T
Q  119 tcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgag 218  Q
    |||||||  |||||||||||||| |||||| ||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| | |||||    
T  13617125 tcttgcaggacaagcattggggtctctaatacactcgaggagtggagaaaaggaatggtgtgaaattagagagagcgagctttgggatttacggtatgag 13617026  T
Q  219 aattcta 225  Q
    |||||||    
T  13617025 aattcta 13617019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 52352580 - 52352360
Alignment:
Q  27 ttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcctcttgcaa 126  Q
    ||||||||||||||||||| |||||||| ||||||  | | |||||| |||||||||||||| | ||||||       |||| |||||||||||||||      
T  52352580 ttcaaacaatatgcatttgaacatgatatagaagaacgagaagagctagtggcaataggcaaagcgatagtaaagaagtgtgggggattgcctcttgctg 52352481  T
Q  127 cacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgagaattctac 226  Q
    |||||||||| ||  ||||||||| |||||| | || ||||||||||||| ||||||||||||||||| ||||||||  |||| |  ||||||||||||     
T  52352480 cacaagcattaggaggtctaatgcgctcaagaaatggagaaaaggaatgggttgaaattaaagagagcaagctttggtctttatcagatgagaattctat 52352381  T
Q  227 tttgccagctctgaggttgag 247  Q
    |||||| ||  ||||||||||    
T  52352380 tttgcctgccttgaggttgag 52352360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 20296059 - 20296299
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcc 118  Q
    |||| |||||||||||| |||||||| ||||| | |||||||||  | || ||||||||| |||||| |||||||||||       |||   ||||||||    
T  20296059 ggttgttgttcaaacaacatgcatttagacattacagagaagagcatacaaagcttgtggaaataggaaaggagatagtaaagaaatgtaatggattgcc 20296158  T
Q  119 tcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgag 218  Q
    ||||||| || ||||||||||  || |||||  ||||| || ||||||||||||||||  ||| |||||||| |  || ||||||| |||||| || ||     
T  20296159 tcttgcagcaaaagcattgggaggtttaatggtctcaatgaatgaagaaaaggaatggcgtgatattaaagacaatgacctttgggctttaccacaagaa 20296258  T
Q  219 aattctactttgccagctctgaggttgagctactttcattt 259  Q
    || |||| |||||| ||| ||||| |||| |||||| ||||    
T  20296259 aaatctattttgcctgctttgaggctgagttacttttattt 20296299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 26707961 - 26707721
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtnnnnnnntgtgcgggattgcc 118  Q
    |||| |||||||||||| |||||||| ||||| | |||||||||  | || ||||||||| |||||| |||||||||||       |||   ||||| ||    
T  26707961 ggttgttgttcaaacaacatgcatttagacattacagagaagagcatacaaagcttgtggaaataggaaaggagatagtaaaaaaatgtaatggattacc 26707862  T
Q  119 tcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgag 218  Q
    ||||||| || ||||||||||  || |||||  ||||| || |||||||||||||||| |||| |||||||| || ||||||||||||||||| || ||     
T  26707861 tcttgcagcaaaagcattgggaggtttaatgttctcaatgaatgaagaaaaggaatggcttgatattaaagacagtgagctttgggatttaccacaagaa 26707762  T
Q  219 aattctactttgccagctctgaggttgagctactttcattt 259  Q
    || |||| |||||| ||| |||||||||| |||||| ||||    
T  26707761 aaatctattttgcctgctttgaggttgagttacttttattt 26707721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 9340 - 9295
Alignment:
Q  52 atagagaagagagtgcagagcttgtggcaataggcaaggagatagt 97  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  9340 atagagaagagcgtgcagagcttgtggcaataggcaaggagttagt 9295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 4660 - 4615
Alignment:
Q  52 atagagaagagagtgcagagcttgtggcaataggcaaggagatagt 97  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  4660 atagagaagagcgtgcagagcttgtggcaataggcaaggagttagt 4615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 18873364 - 18873409
Alignment:
Q  52 atagagaagagagtgcagagcttgtggcaataggcaaggagatagt 97  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  18873364 atagagaagagcgtgcagagcttgtggcaataggcaaggagttagt 18873409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 16797156 - 16797119
Alignment:
Q  52 atagagaagagagtgcagagcttgtggcaataggcaag 89  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  16797156 atagagaagagcgtgcagagcttgtggcaataggcaag 16797119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 18806370 - 18806415
Alignment:
Q  52 atagagaagagagtgcagagcttgtggcaataggcaaggagatagt 97  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||    
T  18806370 atagagaagagcgagcagagcttgtggcaataggcaaggagttagt 18806415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 259
Target Start/End: Original strand, 25293497 - 25293641
Alignment:
Q  115 tgcctcttgcaacacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgca 214  Q
    ||||||||||| |||||| ||| ||  ||||||||| ||||||||||| |||||| || ||| ||||||||||   ||||  |||||||| |||||  ||    
T  25293497 tgcctcttgcagcacaagtatttggaggtctaatgcgctcaaggagtggagaaaaagagtggcttgaaattaagctgagcacgctttgggctttacaaca 25293596  T
Q  215 tgagaattctactttgccagctctgaggttgagctactttcattt 259  Q
     |||||||||| ||| ||  |  || |||||||||||||| ||||    
T  25293597 agagaattctatttttccttccttgtggttgagctacttttattt 25293641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 38939511 - 38939578
Alignment:
Q  30 aaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagt 97  Q
    |||||| |||| |||||||  ||| | ||||||  |||||||||||| ||||||||||||||||||||    
T  38939511 aaacaacatgcttttggaccagatggggaagagcatgcagagcttgtagcaataggcaaggagatagt 38939578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 25293418 - 25293484
Alignment:
Q  19 ggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaatagg 85  Q
    |||| ||||||||||||||||||||||||||| | | ||| ||| ||||| | ||||| ||||||||    
T  25293418 ggttgttgttcaaacaatatgcatttggacattacaaagatgagtgtgcaaaacttgtcgcaatagg 25293484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 8522 - 8458
Alignment:
Q  24 ttgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaa 88  Q
    |||||||||||| | || |||||| |  || |||||||| |||||||||||||||||||||||||    
T  8522 ttgttcaaacaacaagcttttggagaaaatcgagaagagcgtgcagagcttgtggcaataggcaa 8458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 12836 - 12800
Alignment:
Q  52 atagagaagagagtgcagagcttgtggcaataggcaa 88  Q
    ||||||||||| |||||||||||||||||||||||||    
T  12836 atagagaagagcgtgcagagcttgtggcaataggcaa 12800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 13378073 - 13378033
Alignment:
Q  57 gaagagagtgcagagcttgtggcaataggcaaggagatagt 97  Q
    |||||| ||||||||||||  ||||||||||||||||||||    
T  13378073 gaagagcgtgcagagcttgcagcaataggcaaggagatagt 13378033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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