View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2192_high_4 (Length: 237)
Name: NF2192_high_4
Description: NF2192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2192_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44837901 - 44837679
Alignment:
| Q |
1 |
cctgcgagattcatttcaggggtttgaccgttaccgaatttgtttaggaaagctatgttaacatgggagtattttccggttgcgcatgcttcggataagg |
100 |
Q |
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| T |
44837901 |
cctgcgagattcatttcaggggtttgaccgttaccgaatttgtttaggaaagctatgttaacatgggagtattttccggttgcgcatgcttcggataagg |
44837802 |
T |
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| Q |
101 |
ttccctcgttgccattttggccccaatagattgctatgccaccagcatgggaagttgcaactagagtgaggaatagaagaataagagacaaaaaggtgtg |
200 |
Q |
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| T |
44837801 |
ttccctcgttgccattttggccccaatagattgctatgccaccagcatgggaagttgcaactagagtgaggaatagaagaataagagacaaaaaggtgtg |
44837702 |
T |
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| Q |
201 |
agagttttttgccatctttgtga |
223 |
Q |
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| T |
44837701 |
agagttttttgccatctttgtga |
44837679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 44848880 - 44848775
Alignment:
| Q |
112 |
ccattttggccccaatagattgctatgccaccagcatgggaagttgcaactagagtgaggaatagaagaataagagacaaaaaggtgtgagagttttttg |
211 |
Q |
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| T |
44848880 |
ccattttggccccagtagatggctatgccaccagcataggaggttctaacaagagtgaggaa---aagaaaaagtgac---aaggtatgagaattctttg |
44848787 |
T |
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| Q |
212 |
ccatctttgtga |
223 |
Q |
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| T |
44848786 |
ccatctttgtga |
44848775 |
T |
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