View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2192_low_10 (Length: 227)
Name: NF2192_low_10
Description: NF2192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2192_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 28384757 - 28384539
Alignment:
| Q |
9 |
tatgttgaatcagtattatgcaaatgaatgtggtactactctttatctggtgtcaaggttcttggttctgtttcaggtttaactccaattttaagtatca |
108 |
Q |
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| T |
28384757 |
tatgttgaatcagtattatgcaaatcaatgtggtactactctttatctggtgtcaaggttcttggttctgtttcaggtttaactccaattttaagtatca |
28384658 |
T |
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| Q |
109 |
caagtccttctatacagtctcaaacaatcccatatgcaataatattcaaagttggcatcaacctggatctctttaggataaaatcaatcctcaaatgatc |
208 |
Q |
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| T |
28384657 |
taagtccttctatatggtctcaaacaatcccatatgcaataatattcaaagttggcatcaacctggatctctttaggataaaatcaatcctcaaatgatc |
28384558 |
T |
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| Q |
209 |
acttcatttttagtagctc |
227 |
Q |
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| T |
28384557 |
acttcatttttagtagctc |
28384539 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 42493446 - 42493497
Alignment:
| Q |
39 |
tggtactactctttatctggtgtcaaggttcttggttctgtttcaggtttaa |
90 |
Q |
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| T |
42493446 |
tggtactgctctttatctggtgtcaacgttcttggttctattccatgtttaa |
42493497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 42493582 - 42493654
Alignment:
| Q |
150 |
atattcaaagttggcatcaacctggatctctttaggataaaatcaatcctcaaatgatcacttcatttttagt |
222 |
Q |
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| T |
42493582 |
atattgaaagttgttatcaactttgatttctttaggatataaacaatctccaaatgatcactccatttttagt |
42493654 |
T |
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