View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2192_low_2 (Length: 499)
Name: NF2192_low_2
Description: NF2192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2192_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 176 - 492
Target Start/End: Original strand, 39359893 - 39360209
Alignment:
| Q |
176 |
taaattttcaacacattatttcctttgaccaatgttgtataaataaacaatacacacgaggatttacgtatccaatcaaaaaagttagcaataatgaatc |
275 |
Q |
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| T |
39359893 |
taaattttcaacacattatttcctttgaccaatgttgtataaataaacaatacacacgaggatttacgtatccaatcaaaaaagttagcaataatgaatc |
39359992 |
T |
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| Q |
276 |
agatgaagtggtgcgaattagaagcaacaagattaaggtgcaaagaacatccaaatgataaacaattaccaggggtttgttcctcttgtttaagagacaa |
375 |
Q |
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| T |
39359993 |
agatgaagtggtgcgaattagaagcaacaagattaaggtgcaaagaacatccaaatgataaacaattaccaggtgtttgttcctcttgtttaagagacaa |
39360092 |
T |
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| Q |
376 |
actctcaaacctatactccaagaaccctattgattctctctactattgttctccttcttctcctgcttctcctcaacctattgacgatgcctcaactaat |
475 |
Q |
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| T |
39360093 |
actctcaaacctatactccaagaaccctgttgattctctctactattgttctccttcttctcctgcttctcctcaacctattgacgatgcctcaactaat |
39360192 |
T |
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| Q |
476 |
catgggtcttcatctca |
492 |
Q |
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| T |
39360193 |
catgggtcttcatctca |
39360209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 39359767 - 39359907
Alignment:
| Q |
18 |
acgtttttcatatcctgacgggaataataataatccaataatcatttagtttaatgatattaaacgcagcaatattagaaaaacaggaaccttcgaggtt |
117 |
Q |
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| T |
39359767 |
acgtttttcatatcctgacgggaataataata---caataataatttagtttaatgatattaaacgcagcaatattagaaaaacaggaaccttcgaggtt |
39359863 |
T |
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| Q |
118 |
gtcgtactttgtattattgttgcattttataaattttcaacaca |
161 |
Q |
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| T |
39359864 |
gtcgtactttgtattattgttgcattttataaattttcaacaca |
39359907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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