View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2192_low_3 (Length: 369)
Name: NF2192_low_3
Description: NF2192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2192_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 17090790 - 17091143
Alignment:
| Q |
1 |
tgaaaccataccaaccaaaccaaagcatgaaggtaccaagaacaacaagtgaagcactatgtccgcggagtgcaacggctcgaccagagtgatcgaaccg |
100 |
Q |
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| T |
17090790 |
tgaaaccataccaaccaaaccaaagcatgaaggtaccaagaacaacaagagaagcactgtgtccgcgaagagctacggctcgaccagagtgatcgaaccg |
17090889 |
T |
|
| Q |
101 |
tccaatccgcggaccttcaatgagtgctccccaaagaccagcaataccaccaaccatatgaacaacaccggagccagcgaaatcaatgactccggtacca |
200 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
17090890 |
tccaattcgtggaccttcaatgagtgctccccaaagaccagcaataccaccaaccatatgaacaacaccggagccagcaaaatcaatgactcctgtacca |
17090989 |
T |
|
| Q |
201 |
aagagtaggttgccggtgttggttgcgctagcccaaccatcaccggaccagaaccaatgagaaaccacagggtatacaaaccctgtgagaaaagatgagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17090990 |
aagagtaggttgccggtgttggttgcgctagcccaaccatcaccggaccagaaccaatgagaaaccacagggtaaacaaaccctgtgagaaaagatgagt |
17091089 |
T |
|
| Q |
301 |
atataagataagcaacgaactgagttcgttccgctatagagccgctggtgatac |
354 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17091090 |
atataagataagcaacgaactgagttcgttccgctatagagccgctggtgatac |
17091143 |
T |
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