View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2193_low_1 (Length: 529)
Name: NF2193_low_1
Description: NF2193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2193_low_1 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 5 - 529
Target Start/End: Original strand, 7299994 - 7300515
Alignment:
| Q |
5 |
cattacaaagaagaaccatcatggagctactacatgagagtaagaacaatggacgaagatcaaatggagagaataatgaggatagctacacaaagtgctg |
104 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
7299994 |
cattaccaagtagaaccatcatggagctactacatgagagtaagaacaatggaagaagatcaaatggagagaataatgagcatagcaacacaaagtgctg |
7300093 |
T |
|
| Q |
105 |
ttgtgatattcagcataagtagttgttgtatgtgtcatgcaatgaagagtttgttctgtggaatgggagtgaatgcaatggttcatgaagttgatgaaga |
204 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7300094 |
ttgtgatattcagcataagtagttgctgtatgtgtcatgcaatgaagagtttgttctgtggaatgggagtgaatgcaatggttcatgaagttgatgaaga |
7300193 |
T |
|
| Q |
205 |
tcctaaagggaaagaaatgaaaagagcattgatgaggttacttggaaattcaacatcacttccagttgttttcattggtggtaaattagttggttctatg |
304 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
7300194 |
tcctaaagggaaagaaatgaaaagagtattgatgaggttacttggaaattcaacatcacttccggttgttttcattggtggcaaattagttggttctatg |
7300293 |
T |
|
| Q |
305 |
gatagagttttggcttttcatatcaatagttcacttattcctcttctcaaagatgctggtgctttatggctttaattaattactgattattgatcataat |
404 |
Q |
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||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7300294 |
gatagagttttggcttttcatattaatggttctcttgttcctcttctcaaagatgctggtgctttatggctttaattaattactgattattgatcataat |
7300393 |
T |
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| Q |
405 |
cactgacttgcagtaaatgtagcaaatcacagtcattaagacagataattatagtcaaatatgagcaattaccagctagattcagtagaaaaaattgtct |
504 |
Q |
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| T |
7300394 |
cactgacttgcagtaaatgtagcaaatcacagtcattaagacagataattgtagtcaaatatgagca---tccagctagattcagtagaaaaaattgtct |
7300490 |
T |
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| Q |
505 |
gataaccgtgacttgtaactattga |
529 |
Q |
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|||||| ||||||||||||| |||| |
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| T |
7300491 |
gataactgtgacttgtaactcttga |
7300515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 5 - 510
Target Start/End: Complemental strand, 7333681 - 7333194
Alignment:
| Q |
5 |
cattacaaagaagaaccatcatggagctactacatgagagtaagaacaatggacgaagatcaaatggagagaataatgaggatagctacacaaagtgctg |
104 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7333681 |
cattaccaagtagaaccatcatggagctactacatgagagtaagaacaatggaagaagatcaaatggagagaataatgaggatagctacacaaagtgctg |
7333582 |
T |
|
| Q |
105 |
ttgtgatattcagcataagtagttgttgtatgtgtcatgcaatgaagagtttgttctgtggaatgggagtgaatgcaatggttcatgaagttgatgaaga |
204 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7333581 |
ttgtgatattcagcataagtagttgttgtatgtgccatgcaatgaagagtttgttctgtggaatgggagtgaatgcaatggttcatgaagttgatgaaga |
7333482 |
T |
|
| Q |
205 |
tcctaaagggaaagaaatgaaaagagcattgatgaggttacttggaaattcaacatcacttccagttgttttcattggtggtaaattagttggttctatg |
304 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7333481 |
tcctaaagggaaacaaatgaaaagagcattgatgaggttacttggaaattcaacatcacttccagttgttttcattggtggcaaattagttggttctatg |
7333382 |
T |
|
| Q |
305 |
gatagagttttggcttttcatatcaatagttcacttattcctcttctcaaagatgctggtgctttatggctttaattaattactgattattgatcataat |
404 |
Q |
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||||||||||||||||||||||| ||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
7333381 |
gatagagttttggcttttcatattaatggttctcttgttccacttctcaaagatgctggtgctttatggctttaattaat--atgattagtgatcataag |
7333284 |
T |
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| Q |
405 |
cactgacttgcagtaaatgtagcaaatcacagtcattaagacagataattatagtcaaatatgagcaattaccagctagattcagtagaaaaaattgtct |
504 |
Q |
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|||| |||||||||||||||||| |||||| ||||| | |||| | ||||||||| ||||||||||||||||||||||||||||| |
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| T |
7333283 |
cacttacttgcagtaaatgtagc-------------taagactgataactgtagtgatatatgagca---tccagctagattcagtagaaaaaattgtct |
7333200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 21 - 382
Target Start/End: Complemental strand, 7340454 - 7340093
Alignment:
| Q |
21 |
catcatggagctactacatgagagtaagaacaatggacgaagatcaaatggagagaataatgaggatagctacacaaagtgctgttgtgatattcagcat |
120 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7340454 |
catcatggagctactacatgagagtaagaacaatggaagaagatcaaatggagagaatcatgaggatagctacacaaagtgctgttgtgatattcagcat |
7340355 |
T |
|
| Q |
121 |
aagtagttgttgtatgtgtcatgcaatgaagagtttgttctgtggaatgggagtgaatgcaatggttcatgaagttgatgaagatcctaaagggaaagaa |
220 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7340354 |
aagtagttgctgtatgtgtcatgcaatgaagagtttgttctgtggtatgggagtgaatgcaatggttcatgaagttgatgaagatcctaaagggaaagaa |
7340255 |
T |
|
| Q |
221 |
atgaaaagagcattgatgaggttacttggaaattcaacatcacttccagttgttttcattggtggtaaattagttggttctatggatagagttttggctt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7340254 |
atgaaaagagcattgatgaggttacttggaaattcaacatcacttccagttgttttcattggtgggaaattagttggttctatggatagagttttggctt |
7340155 |
T |
|
| Q |
321 |
ttcatatcaatagttcacttattcctcttctcaaagatgctggtgctttatggctttaatta |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7340154 |
ttcatatcaatagttcacttattcctcttctcaaagatgctggtgctttatggctttaatta |
7340093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 107 - 377
Target Start/End: Original strand, 8908888 - 8909158
Alignment:
| Q |
107 |
gtgatattcagcataagtagttgttgtatgtgtcatgcaatgaagagtttgttctgtggaatgggagtgaatgcaatggttcatgaagttgatgaagatc |
206 |
Q |
| |
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||||| ||||||||||| | |||||| ||||||||||| || ||||| |||||||||||||||||||||||| || ||||||||| |||||||||||| |
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| T |
8908888 |
gtgattttcagcataagcacttgttgcatgtgtcatgctatcaagagattgttctgtggaatgggagtgaatccagctgttcatgaacttgatgaagatc |
8908987 |
T |
|
| Q |
207 |
ctaaagggaaagaaatgaaaagagcattgatgaggttacttggaaattcaacatcacttccagttgttttcattggtggtaaattagttggttctatgga |
306 |
Q |
| |
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| | ||| |||||| | |||||||| | ||||| | ||||| | ||||| |||| ||||||||||||||||||||| | ||||| ||||||| |
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| T |
8908988 |
caagaggcaaagaacttgaaagagcacttatgagacttcttggtacttcaaatgttgttcctgttgttttcattggtggtaaacttattggtactatgga |
8909087 |
T |
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| Q |
307 |
tagagttttggcttttcatatcaatagttcacttattcctcttctcaaagatgctggtgctttatggcttt |
377 |
Q |
| |
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|||||| |||||| |||||| ||| |||| ||| |||||||||||||| | ||||||||| | ||||||| |
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| T |
8909088 |
tagagtcatggcttgtcatattaatggttctcttgttcctcttctcaaacaagctggtgctctttggcttt |
8909158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 310 - 410
Target Start/End: Complemental strand, 7376327 - 7376227
Alignment:
| Q |
310 |
agttttggcttttcatatcaatagttcacttattcctcttctcaaagatgctggtgctttatggctttaattaattactgattattgatcataatcactg |
409 |
Q |
| |
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|||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
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| T |
7376327 |
agttttggcttttcatattaacggttctcttgttcctcttctcaaagatgctggtgctttatggctttaattaattactcattactgatcataagcactg |
7376228 |
T |
|
| Q |
410 |
a |
410 |
Q |
| |
|
| |
|
|
| T |
7376227 |
a |
7376227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 52
Target Start/End: Complemental strand, 7376361 - 7376330
Alignment:
| Q |
21 |
catcatggagctactacatgagagtaagaaca |
52 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7376361 |
catcatggagctactacatgagagtaagaaca |
7376330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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