View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2193_low_4 (Length: 239)
Name: NF2193_low_4
Description: NF2193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2193_low_4 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 37704716 - 37704492
Alignment:
| Q |
15 |
ctgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704716 |
ctgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagat |
37704617 |
T |
|
| Q |
115 |
attatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcaccccca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704616 |
attatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcaccccca |
37704517 |
T |
|
| Q |
215 |
aaacaaaataagggaatacgtagac |
239 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37704516 |
aaacaaaataagggaatacgtagac |
37704492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 37699238 - 37699013
Alignment:
| Q |
18 |
tgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaaga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||||||| ||| ||| |||| |
|
|
| T |
37699238 |
tgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttggttttccaaga |
37699139 |
T |
|
| Q |
114 |
tattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcaccccc |
213 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
37699138 |
tgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatgaaaagcaccccc |
37699039 |
T |
|
| Q |
214 |
aaaacaaaataagggaatacgtagac |
239 |
Q |
| |
|
|| ||||||||||||||||| ||||| |
|
|
| T |
37699038 |
aacacaaaataagggaatacctagac |
37699013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 37437778 - 37437584
Alignment:
| Q |
18 |
tgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaaga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| |||||||| ||||||| || | |
|
|
| T |
37437778 |
tgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactt----gctaattacgttcgaaaagtcttggtcttccaata |
37437683 |
T |
|
| Q |
114 |
tattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccc |
212 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |||| | |||||||||||||||| |
|
|
| T |
37437682 |
tgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatattgttgccaattgtcatatcactatacggttatgaaaagcacccc |
37437584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 37698864 - 37698732
Alignment:
| Q |
29 |
taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttag |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||| |||||||| ||||| |||||||| |
|
|
| T |
37698864 |
taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttag |
37698765 |
T |
|
| Q |
124 |
tttaatgaacaccaaacttttctatgatggtta |
156 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||| |
|
|
| T |
37698764 |
tttaacgaacaccaaacttttgtatgattgtta |
37698732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 16840970 - 16841109
Alignment:
| Q |
16 |
tgtgattgctacttaaatgaatttgttatcttat------cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttc |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
16840970 |
tgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaaagtcttggtcttc |
16841068 |
T |
|
| Q |
109 |
gaagatattatttagtttaatgaacaccaaacttttctatg |
149 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||| |||| |
|
|
| T |
16841069 |
caagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University