View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2194_high_13 (Length: 304)
Name: NF2194_high_13
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2194_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 33992585 - 33992299
Alignment:
| Q |
1 |
atcctcctctgaagggttttgatgctgcaaaaggttcttgtttagctcttctgatcccatttccacttcttctactatggagctgcaagttgtttaaata |
100 |
Q |
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| T |
33992585 |
atcctcctctgaagggttttgatgctgtaaaaggttcttgtttagctcttctgatcccatttccacttcttctactatggagctgcaagttgtttaaata |
33992486 |
T |
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| Q |
101 |
tttttcatgaaatgtaatcatatgttgcactatatgtcatataaatataaatataaataattaaactattgaaaataggagacctcatttaaaccttgat |
200 |
Q |
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| T |
33992485 |
tttttcatgaaatgtaatcatatgttgcactatatgtcatataaatata------aataattaaactattgaaaataggagacctcatttaaaccttgat |
33992392 |
T |
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| Q |
201 |
taatatacatgtaaaaataaactggactgatgaatgacataaaatatatgcttacacttatgttcgtgatgttctcctgaattatattcttcg |
293 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33992391 |
taatatacatgtaaaaaaaaactggactgatgaatgacataaaatatatgcttacacttatgttcgtgatgttctcctgaattatatttttcg |
33992299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 33982826 - 33982754
Alignment:
| Q |
2 |
tcctcctctgaagggttttgatgctgcaaaaggttcttgtttagctcttctgatcccatttccacttcttcta |
74 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33982826 |
tcctcctctgaagtattttgatgctgcaaaaggttcttgtttagctcttctgatcccatttccacttcttcta |
33982754 |
T |
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