View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2194_high_18 (Length: 246)

Name: NF2194_high_18
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2194_high_18
NF2194_high_18
[»] chr7 (22 HSPs)
chr7 (1-240)||(32871542-32871786)
chr7 (84-194)||(8462869-8462977)
chr7 (84-240)||(6000501-6000655)
chr7 (84-194)||(4133074-4133182)
chr7 (65-193)||(18417454-18417580)
chr7 (90-193)||(32389680-32389781)
chr7 (136-240)||(472670-472774)
chr7 (136-194)||(16962916-16962974)
chr7 (136-193)||(24846316-24846373)
chr7 (135-194)||(26041744-26041802)
chr7 (136-240)||(30284107-30284211)
chr7 (84-194)||(43392320-43392428)
chr7 (136-194)||(472803-472861)
chr7 (84-194)||(6000684-6000792)
chr7 (85-240)||(37691718-37691871)
chr7 (136-240)||(26041579-26041683)
chr7 (52-155)||(32871883-32871984)
chr7 (143-194)||(37691932-37691983)
chr7 (107-240)||(8463006-8463137)
chr7 (142-193)||(24846450-24846501)
chr7 (136-193)||(24485773-24485830)
chr7 (142-194)||(30283995-30284047)
[»] chr3 (22 HSPs)
chr3 (84-194)||(31071151-31071259)
chr3 (75-240)||(18733955-18734116)
chr3 (84-194)||(49220319-49220427)
chr3 (54-240)||(49220106-49220290)
chr3 (84-194)||(11047215-11047323)
chr3 (75-194)||(31070962-31071078)
chr3 (136-240)||(52857167-52857271)
chr3 (84-194)||(28253677-28253785)
chr3 (136-194)||(46453111-46453169)
chr3 (107-240)||(24244510-24244641)
chr3 (136-194)||(13301884-13301942)
chr3 (136-194)||(13312540-13312598)
chr3 (136-194)||(26246940-26246998)
chr3 (84-194)||(52856998-52857106)
chr3 (59-193)||(26988802-26988934)
chr3 (136-193)||(26247108-26247165)
chr3 (136-193)||(26989147-26989204)
chr3 (143-193)||(46452954-46453004)
chr3 (133-194)||(4953361-4953422)
chr3 (136-193)||(24244702-24244759)
chr3 (136-193)||(28253515-28253572)
chr3 (141-193)||(4953201-4953253)
[»] chr8 (14 HSPs)
chr8 (66-240)||(12654892-12655064)
chr8 (84-190)||(36194868-36194972)
chr8 (84-235)||(36194649-36194798)
chr8 (84-240)||(18847525-18847679)
chr8 (84-194)||(13557377-13557484)
chr8 (65-194)||(12654704-12654831)
chr8 (135-194)||(18847437-18847496)
chr8 (136-194)||(10134680-10134738)
chr8 (136-194)||(40832208-40832266)
chr8 (133-194)||(21015169-21015230)
chr8 (135-240)||(21015003-21015108)
chr8 (137-193)||(31933346-31933402)
chr8 (136-240)||(10134799-10134903)
chr8 (144-240)||(40832297-40832393)
[»] chr4 (23 HSPs)
chr4 (65-194)||(55620196-55620323)
chr4 (65-194)||(55627500-55627627)
chr4 (84-240)||(1113232-1113386)
chr4 (81-192)||(8607795-8607904)
chr4 (59-193)||(55561016-55561148)
chr4 (133-194)||(51399285-51399346)
chr4 (84-194)||(17254683-17254791)
chr4 (136-194)||(44304219-44304277)
chr4 (65-240)||(29429942-29430113)
chr4 (84-194)||(1113414-1113522)
chr4 (84-194)||(36215671-36215779)
chr4 (137-194)||(35016926-35016983)
chr4 (81-165)||(48018629-48018711)
chr4 (135-194)||(29430142-29430201)
chr4 (136-240)||(51399407-51399511)
chr4 (136-194)||(14251268-14251326)
chr4 (141-240)||(14251387-14251486)
chr4 (136-194)||(44304054-44304112)
chr4 (136-193)||(49905800-49905857)
chr4 (132-165)||(55561250-55561283)
chr4 (136-240)||(35016762-35016865)
chr4 (136-240)||(51024519-51024623)
chr4 (136-194)||(24039486-24039544)
[»] chr1 (25 HSPs)
chr1 (84-194)||(39277604-39277712)
chr1 (84-189)||(47421913-47422016)
chr1 (77-194)||(19920520-19920635)
chr1 (77-193)||(45823025-45823139)
chr1 (84-194)||(7714194-7714302)
chr1 (84-193)||(39277820-39277927)
chr1 (65-229)||(16959040-16959202)
chr1 (84-235)||(28990494-28990643)
chr1 (84-240)||(27334367-27334521)
chr1 (84-193)||(47422099-47422206)
chr1 (84-234)||(10394152-10394300)
chr1 (59-194)||(30049912-30050045)
chr1 (84-194)||(28990321-28990429)
chr1 (84-194)||(45822809-45822917)
chr1 (75-193)||(52285290-52285406)
chr1 (84-194)||(10394367-10394475)
chr1 (78-177)||(16958858-16958955)
chr1 (136-194)||(10719561-10719619)
chr1 (136-193)||(35814325-35814382)
chr1 (84-240)||(36076907-36077061)
chr1 (136-240)||(52285126-52285228)
chr1 (136-193)||(7714410-7714466)
chr1 (143-240)||(15158481-15158578)
chr1 (84-164)||(36077121-36077199)
chr1 (144-240)||(10719436-10719532)
[»] chr5 (12 HSPs)
chr5 (65-240)||(8417562-8417735)
chr5 (90-193)||(9990161-9990262)
chr5 (136-194)||(14662599-14662657)
chr5 (133-194)||(35463800-35463861)
chr5 (135-194)||(9990026-9990085)
chr5 (136-240)||(17115510-17115614)
chr5 (107-194)||(18508759-18508844)
chr5 (84-240)||(18968698-18968847)
chr5 (136-194)||(18968581-18968639)
chr5 (141-194)||(8417796-8417849)
chr5 (144-194)||(1983486-1983536)
chr5 (133-194)||(35463631-35463692)
[»] chr2 (12 HSPs)
chr2 (85-235)||(12701950-12702098)
chr2 (132-194)||(25945894-25945956)
chr2 (136-194)||(38978852-38978910)
chr2 (136-194)||(16581409-16581467)
chr2 (77-194)||(21304343-21304457)
chr2 (136-194)||(36065286-36065344)
chr2 (136-194)||(10373252-10373310)
chr2 (136-235)||(12261020-12261119)
chr2 (84-194)||(12702163-12702271)
chr2 (136-194)||(36065451-36065509)
chr2 (136-194)||(16203680-16203738)
chr2 (133-240)||(25946017-25946124)
[»] chr6 (3 HSPs)
chr6 (84-229)||(1211597-1211740)
chr6 (136-193)||(959246-959303)
chr6 (77-193)||(1211409-1211523)
[»] scaffold0220 (2 HSPs)
scaffold0220 (135-194)||(26034-26093)
scaffold0220 (136-194)||(26200-26258)
[»] scaffold0009 (1 HSPs)
scaffold0009 (136-191)||(233672-233727)
[»] scaffold0130 (1 HSPs)
scaffold0130 (90-193)||(25490-25592)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32871542 - 32871786
Alignment:
Q  1 ttttgcattaaagttttgaatataatgaaatgatagag------tcatggagacatatttttaaaaaggtttaaatccttttttgatctcttaacttgat 94  Q
    |||||||||||||||||||||||||||||||| |||||      |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  32871542 ttttgcattaaagttttgaatataatgaaatgctagagagagagtcatggagacatatttttaaaaaggtttaaatacttttttgatcccttaacttgat 32871641  T
Q  95 ttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    || || |||  ||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32871642 tttaagtattggtttggtcccataaataa-taaaaaaatctgtttaggtcccttaactttatttaaagtatgagtttggttctttatgttaatttaattc 32871740  T
Q  195 nnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
           |||||||||||||| ||||||||||||||||||| ||||    
T  32871741 aaaaaaacgttaagttttggtcccttaacttatttcattagtatta 32871786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 8462869 - 8462977
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    ||||||||||||||||||||||||||| ||||||||||||  ||||   ||||||||||||| |||||||||||||||||||  ||||| | |||| |||    
T  8462869 cttaacttgatttcaaatatcagtttggtcccataaataataaaatg--tctgtttaggtcctttaactttatttaaagtattggtttgatcctttctgt 8462966  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  8462967 taatttaattc 8462977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 6000501 - 6000655
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||| ||||| |||||||| ||| |||| || ||  ||||||||||||||||||||||||||||| |||||||| |||| |||    
T  6000501 cttaacttgatttcaagtatcggtttggtcccataagtaa-taaa-aagtccatttaggtcccttaactttatttaaagtatcagtttggtcctttctgt 6000598  T
Q  184 taatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    ||||||||||        |||||| ||||||| | ||||||||||| ||||| ||||    
T  6000599 taatttaatttaaaaaaacgttaaattttggtccattaacttatttaattagtatta 6000655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 4133182 - 4133074
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||  |||||||| ||||| |||  ||||   || |||||||||||||||||||||||||||| | |||||||| |||| |||    
T  4133182 cttaacttgatttcaagtattggtttgatctcataagtaataaaatg--tccgtttaggtcccttaactttatttaaagtgtcagtttggtcctttctgt 4133085  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  4133084 taatttaattc 4133074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 18417580 - 18417454
Alignment:
Q  65 ttaaatccttttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagta 164  Q
    |||||| |||||||| || |||||||| ||||||| |||| ||||||||| |||||||| |||| |  ||  ||||||||||||||||||||||||||||    
T  18417580 ttaaatgcttttttggtcccttaactttatttcaagtatcggtttgatcctataaataa-taaa-aggtccatttaggtcccttaactttatttaaagta 18417483  T
Q  165 taagtttggttctttatgttaatttaatt 193  Q
    | | |||||| ||||   |||||||||||    
T  18417482 tcaatttggtcctttccattaatttaatt 18417454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 32389781 - 32389680
Alignment:
Q  90 ttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaattt 189  Q
    |||||||||| |||||||||| ||| |||| |||  ||||   |||||||| |||||||||||||||||||||||| |||||| | |||| |||||||||    
T  32389781 ttgatttcaagtatcagtttggtccaataagtaataaaatg--tctgtttaagtcccttaactttatttaaagtatcagtttgatcctttttgttaattt 32389684  T
Q  190 aatt 193  Q
    ||||    
T  32389683 aatt 32389680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 472670 - 472774
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattag 235  Q
    |||||||||||||||||||||| ||||||| |||||||| |||| ||||||||||||||        ||||| ||||||| ||||| ||||||| |||||    
T  472670 gtttaggtcccttaactttattgaaagtatcagtttggtcctttctgttaatttaattcaaaaaaatgttaaattttggtcccttatcttatttaattag 472769  T
Q  236 aatta 240  Q
     ||||    
T  472770 tatta 472774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 16962916 - 16962974
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||||||||| ||||||||||||||||||| | |||| |||||||||||||||||||||    
T  16962916 gtttaggtccattaactttatttaaagtatcattttgattctttatgttaatttaattc 16962974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 24846316 - 24846373
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaatt 193  Q
    |||||||||||||||||||||||||||||| |||||| |  |||||||||||||||||    
T  24846316 gtttaggtcccttaactttatttaaagtatcagtttgatcatttatgttaatttaatt 24846373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 26041802 - 26041744
Alignment:
Q  135 tgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||||    
T  26041802 tgtttaggtcccttaactttatttaaagtatcggttt-gatctttatgttaatttaattc 26041744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 30284211 - 30284107
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattag 235  Q
    |||||||||||||||||||||| |||||||  |||||||  ||| ||||||||||||||       |||||| ||||||| ||||| ||||||| |||||    
T  30284211 gtttaggtcccttaactttattgaaagtatcggtttggtcatttctgttaatttaattcaaaaaaacgttaaattttggtcccttatcttatttaattag 30284112  T
Q  236 aatta 240  Q
     ||||    
T  30284111 tatta 30284107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 43392320 - 43392428
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||  ||||| |||||||||||  | || |  || |||||||||||||||||||||||||| |||  ||||||| | || |||    
T  43392320 cttaacttgatttcaagtattggtttggtcccataaata--ttaaaaggtccgtttaggtcccttaactttatttaaaatatcggtttggtcccttttgt 43392417  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  43392418 taatttaattc 43392428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 472861 - 472803
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||||||||||  ||||| | |||| ||||||||||||||    
T  472861 gtttaggtcccttaactttatttaaagtatcggtttgatcctttctgttaatttaattc 472803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 6000792 - 6000684
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    ||||| || ||||||| |||||||||| ||| |||| ||| |||| || || ||||||||||||||||||||||||||||||  ||| ||| |||| | |    
T  6000792 cttaatttaatttcaagtatcagtttggtcctataagtaa-taaa-aagtccgtttaggtcccttaactttatttaaagtatccgttaggtcctttctct 6000695  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  6000694 taatttaattc 6000684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 37691718 - 37691871
Alignment:
Q  85 ttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgtt 184  Q
    ||||||||||||||| |||| ||||||| |||||| ||| |||| || || | ||| ||||||||| |||||||||||||| | ||||||  ||| ||||    
T  37691718 ttaacttgatttcaagtatcggtttgattccataagtaa-taaa-aagtccgattaagtcccttaattttatttaaagtatcactttggtcttttctgtt 37691815  T
Q  185 aatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    ||||||||||        ||||| ||||||| | ||||||||||| ||||| ||||    
T  37691816 aatttaattcaaaaaaaagttaaattttggtccattaacttatttaattagtatta 37691871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 26041579 - 26041683
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattag 235  Q
    |||| ||||||||||||||||| |||||||  ||||||| |||| ||||||||||||||       |||||| ||||| | ||||| ||||||| |||||    
T  26041579 gttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaattcaaaaaaacgttaaattttgatcccttatcttatttaattag 26041678  T
Q  236 aatta 240  Q
     ||||    
T  26041679 tatta 26041683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 32871984 - 32871883
Alignment:
Q  52 tttttaaaaaggtttaaatccttttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaac 151  Q
    |||||||||||| |||| | || ||||| |||||||| |||||||||| ||||  |||| |||||||||| |||||| ||||| ||||||||| |||||     
T  32871984 tttttaaaaaggcttaa-tgctattttggtctcttaatttgatttcaagtatcgatttggtcccataaat-aataaaaaaatccgtttaggtcacttaat 32871887  T
Q  152 ttta 155  Q
    ||||    
T  32871886 ttta 32871883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 37691983 - 37691932
Alignment:
Q  143 tcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||| |||||||| ||||  |||||||||||||    
T  37691983 tcccttaactttatttaaagtatcagtttggtcctttcagttaatttaattc 37691932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 240
Target Start/End: Complemental strand, 8463137 - 8463006
Alignment:
Q  107 tttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgtta 206  Q
    ||||||||| ||||||| |||| || || |||||| ||||||||||||||||||||||  ||||||||   || ||||||||||||||       |||||    
T  8463137 tttgatcccttaaataa-taaa-aattccgtttagatcccttaactttatttaaagtaacagtttggtctcttctgttaatttaattcaaaacaacgtta 8463040  T
Q  207 agttttggttccttaacttatttcattagaatta 240  Q
    | |||||||   ||||||||||| ||||| ||||    
T  8463039 aattttggtcttttaacttatttaattagtatta 8463006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 24846501 - 24846450
Alignment:
Q  142 gtcccttaactttatttaaagtataagtttggttctttatgttaatttaatt 193  Q
    |||||||||||||||| |||||||  ||||||| |||| |||||||||||||    
T  24846501 gtcccttaactttattgaaagtattggtttggtcctttctgttaatttaatt 24846450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 24485830 - 24485773
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaatt 193  Q
    ||||| |||||||||||||||||||||| |  ||||||| |||| | |||||||||||    
T  24485830 gtttaagtcccttaactttatttaaagtgtcggtttggtcctttctattaatttaatt 24485773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 30283995 - 30284047
Alignment:
Q  142 gtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||||||||||| |||||||||||  ||||| | |||| ||||||||||||||    
T  30283995 gtcccttaacttcatttaaagtatcggtttgatcctttttgttaatttaattc 30284047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 31071259 - 31071151
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||| |||||||||||||||||| |||| |  ||||||||||||||||||||||||||||||||| ||||||||  ||| |||    
T  31071259 cttaacttgatttcaagtatcggtttgatcccataaataa-taaa-aggtctgtttaggtcccttaactttatttaaagtatcagtttggtcatttctgt 31071162  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  31071161 taatttaattc 31071151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 18733955 - 18734116
Alignment:
Q  75 ttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggt 174  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||||   | |||| || |||||||| |||||||||||||||||||||||| ||||| ||    
T  18733955 ttttggtctcttaacttgatttcaagtatcagtttggtcccataat--agtaaa-aagtctgtttaagtcccttaactttatttaaagtatcagtttcgt 18734051  T
Q  175 tctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    ||||| ||||||||||||||        ||||| ||||||| ||||||||||||| ||||| ||||    
T  18734052 tctttctgttaatttaattcaaagaaa-gttaaattttggtcccttaacttatttaattagtatta 18734116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 49220427 - 49220319
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||| ||||||| |||| ||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||||| || ||||| |||| |||    
T  49220427 cttaacttaatttcaagtatcggtttggtcccataaataa-taaa-aagtctgtttaggtcccttaactttatttaaagtatcagcttggtcctttctgt 49220330  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  49220329 taatttaattc 49220319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 240
Target Start/End: Original strand, 49220106 - 49220290
Alignment:
Q  54 tttaaaaaggtttaaatccttttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactt 153  Q
    |||||||||| |||||| |||  ||| || ||||||||||||| || |||| ||||  |||||||||||| |||| || || |||||||||| |||||||    
T  49220106 tttaaaaaggcttaaatgcttaattggtcccttaacttgattttaagtatcggtttagtcccataaataa-taaa-aagtccgtttaggtcctttaactt 49220203  T
Q  154 tatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    |||||||| |||  ||||||| |||| ||||||||||||||       |||||| ||||||| ||||||||||||| ||||| ||||    
T  49220204 tatttaaattatcggtttggtgctttctgttaatttaattcaaaaaaacgttaaattttggtcccttaacttatttaattagtatta 49220290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 11047323 - 11047215
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||| ||||| |||||||| ||| |||| |  || |||||||||||||||||||||||||||||| ||||||||  ||| |||    
T  11047323 cttaacttgatttcaagtatcggtttggtcccataagtaa-taaa-aggtccgtttaggtcccttaactttatttaaagtattagtttggtcatttctgt 11047226  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  11047225 taatttaattc 11047215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 31070962 - 31071078
Alignment:
Q  75 ttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggt 174  Q
    ||||| || ||||||||||||| || |||||||||| |||||||| | |||||| | ||| ||||| ||||||||||||||||| |||||| ||||||||    
T  31070962 ttttggtcccttaacttgattttaagtatcagtttggtcccataagt-aataaa-agatccgtttaagtcccttaactttattt-aagtatcagtttggt 31071058  T
Q  175 tctttatgttaatttaattc 194  Q
     |||| |||||||| |||||    
T  31071059 cctttttgttaattcaattc 31071078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 52857271 - 52857167
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattag 235  Q
    |||||||||||||||||||||||||||||   ||||||| | || ||||||||||||||       |||||| ||||||| ||||||||||||| |||||    
T  52857271 gtttaggtcccttaactttatttaaagtaacggtttggtcccttctgttaatttaattcaaaaaaacgttaaattttggtcccttaacttatttaattag 52857172  T
Q  236 aatta 240  Q
     ||||    
T  52857171 tatta 52857167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 28253785 - 28253677
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||| | ||| |||||||||||| |||| |  |||| ||| |||||||||||||||||||||||| |||||| |  ||| |||    
T  28253785 cttaacttgatttcaagtatcggattggtcccataaataa-taaa-aggtctgattaagtcccttaactttatttaaagtatcagtttgatcatttctgt 28253688  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  28253687 taatttaattc 28253677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 46453169 - 46453111
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||||||||||  |||| || |||||||||||||||||||    
T  46453169 gtttaggtcccttaactttatttaaagtatcggtttagtcctttatgttaatttaattc 46453111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 240
Target Start/End: Original strand, 24244510 - 24244641
Alignment:
Q  107 tttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgtta 206  Q
    ||||||||||||| ||| |||| | |||||||| ||||||||||||||||| |||||||  ||||||| |||||| ||||||||||||       |||||    
T  24244510 tttgatcccataagtaa-taaa-agatctgttttggtcccttaactttattgaaagtatcggtttggtcctttatattaatttaattcaaaaaaacgtta 24244607  T
Q  207 agttttggttccttaacttatttcattagaatta 240  Q
    | |||||||  |||| ||||||| ||||| ||||    
T  24244608 aattttggtctcttatcttatttaattagtatta 24244641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 13301942 - 13301884
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||||||||||  ||||| | |||| ||||||||||||||    
T  13301942 gtttaggtcccttaactttatttaaagtatcggtttgatcctttctgttaatttaattc 13301884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 13312598 - 13312540
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||||||||||  ||||| | |||| ||||||||||||||    
T  13312598 gtttaggtcccttaactttatttaaagtatcggtttgatcctttctgttaatttaattc 13312540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 26246940 - 26246998
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||||||||||  ||||| | |||| ||||||||||||||    
T  26246940 gtttaggtcccttaactttatttaaagtatcggtttgatcctttctgttaatttaattc 26246998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 52856998 - 52857106
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||| ||||||| |||| ||||| |||||||| ||| |||| |  || |||||| | |||||||||||||||||||||  ||||||| |||| |||    
T  52856998 cttaacttaatttcaagtatcggtttggtcccataagtaa-taaa-aggtccgtttagataccttaactttatttaaagtatcggtttggtcctttctgt 52857095  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  52857096 taatttaattc 52857106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 26988802 - 26988934
Alignment:
Q  59 aaaggtttaaatccttttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttattt 158  Q
    ||||| |||||| |||  ||| || |||||||| ||||||| |||||||||  |||||||| |||  ||||   ||  ||||||||||||||||||||||    
T  26988802 aaaggcttaaatgcttaattggtcccttaactttatttcaagtatcagttttgtcccataagtaataaaatg--tccttttaggtcccttaactttattt 26988899  T
Q  159 aaagtataagtttggttctttatgttaatttaatt 193  Q
    |||||||  ||||||| | ||  ||||||||||||    
T  26988900 aaagtatgggtttggtcccttcagttaatttaatt 26988934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 26247165 - 26247108
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaatt 193  Q
    |||| |||| |||||||||||| ||||||| |||||||| |||| |||||||||||||    
T  26247165 gttttggtctcttaactttattgaaagtatcagtttggtcctttctgttaatttaatt 26247108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 26989204 - 26989147
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaatt 193  Q
    ||||| ||||||||| |||||||||||||| |||| | || |||||||||||||||||    
T  26989204 gtttaagtcccttaattttatttaaagtattagttagattttttatgttaatttaatt 26989147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 46452954 - 46453004
Alignment:
Q  143 tcccttaactttatttaaagtataagtttggttctttatgttaatttaatt 193  Q
    ||||||||||||||||||||||  |||||||| | || |||||||||||||    
T  46452954 tcccttaactttatttaaagtaacagtttggtcccttctgttaatttaatt 46453004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 4953422 - 4953361
Alignment:
Q  133 tctgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||||||| |||||||||||||||||||||| |  ||||||| ||||  ||||| |||||||    
T  4953422 tctgtttaagtcccttaactttatttaaagtgtcggtttggtcctttccgttaacttaattc 4953361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 24244759 - 24244702
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaatt 193  Q
    |||||| |||||||||||||||||||||||  ||||| |  ||| |||||||||||||    
T  24244759 gtttagatcccttaactttatttaaagtatcggtttgatcatttctgttaatttaatt 24244702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 28253515 - 28253572
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaatt 193  Q
    ||||| ||||||||||||||||| ||||||  ||||||| | || |||||||||||||    
T  28253515 gtttaagtcccttaactttatttcaagtatcggtttggtcccttctgttaatttaatt 28253572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 4953201 - 4953253
Alignment:
Q  141 ggtcccttaactttatttaaagtataagtttggttctttatgttaatttaatt 193  Q
    ||||||||||||||||||||||||   ||||||| | || |||||||||||||    
T  4953201 ggtcccttaactttatttaaagtaatggtttggtcccttctgttaatttaatt 4953253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 12655064 - 12654892
Alignment:
Q  66 taaatccttttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtat 165  Q
    ||||| || |||||||| |||||||||||||||| |||| ||||| |||||||| ||| |||| |  || ||||||||||||||||||||||||||||||    
T  12655064 taaatgctcttttgatcccttaacttgatttcaagtatcggtttggtcccataagtaa-taaa-agttccgtttaggtcccttaactttatttaaagtat 12654967  T
Q  166 aagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
      ||||||| |||||||| ||||||||||       |||||| |||||||  |||||||||||| ||||| ||||    
T  12654966 ctgtttggtcctttatgtcaatttaattcaaaagaacgttaaattttggtctcttaacttatttaattagtatta 12654892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 190
Target Start/End: Complemental strand, 36194972 - 36194868
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    ||||||||||||| || |||| ||||| ||||||||||||  |||  |||| |||||||||| ||||||||||||||||||| |||||||| |||| |||    
T  36194972 cttaacttgattttaagtatcggtttggtcccataaataatcaaa--aatccgtttaggtcctttaactttatttaaagtatcagtttggtcctttctgt 36194875  T
Q  184 taattta 190  Q
    |||||||    
T  36194874 taattta 36194868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 235
Target Start/End: Original strand, 36194649 - 36194798
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| ||||  |||| |||||||| ||| |||| || ||||||||| ||||||||||||||||||||||| |||||| | |||| | |    
T  36194649 cttaacttgatttcaagtatcgttttggtcccataagtaa-taaa-aagtctgtttagatcccttaactttatttaaagtatcagtttgatcctttctat 36194746  T
Q  184 taatttaattcnnnnnnncgttaagttttggttccttaacttatttcattag 235  Q
    |||||||||||        ||||| ||||||| ||||||||||||| |||||    
T  36194747 taatttaattcaaaaaaaggttaaattttggtcccttaacttatttaattag 36194798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 240
Target Start/End: Complemental strand, 18847679 - 18847525
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||||||||  |||||||| | |||||| || ||| |||| ||||||||||||| ||||| |||   ||||||| | ||||||    
T  18847679 cttaacttgatttcaagtatcagttttgtcccataagt-aataaa-aagtctatttaagtcccttaactttgtttaaggtaacggtttggtcccttatgt 18847582  T
Q  184 taatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    ||||| |||||       |||||| ||||||| ||||||||||||| ||||| ||||    
T  18847581 taattcaattcaaagaaacgttaaattttggtcccttaacttatttaattagtatta 18847525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 13557484 - 13557377
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||| ||||| |||||||| ||| |||| |  || |||||||||||||||||| |||||||||||  |||||||  |||||||    
T  13557484 cttaacttgatttcaagtatcggtttggtcccataagtaa-taaa-aggtccgtttaggtcccttaacttcatttaaagtat-cgtttggtcttttatgt 13557388  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  13557387 taatttaattc 13557377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 194
Target Start/End: Original strand, 12654704 - 12654831
Alignment:
Q  65 ttaaatccttttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagta 164  Q
    |||||| || ||||| || |||||||| ||||||| | || ||||| |||||||||||| |||| |  ||  ||||| | ||||||||||||||||||||    
T  12654704 ttaaatgctcttttggtcccttaactttatttcaagtgtcggtttggtcccataaataa-taaa-aggtccatttagtttccttaactttatttaaagta 12654801  T
Q  165 taagtttggttctttatgttaatttaattc 194  Q
    | |||||||| |||| ||||||||||||||    
T  12654802 tcagtttggtcctttctgttaatttaattc 12654831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 18847437 - 18847496
Alignment:
Q  135 tgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||||| ||||||||||||||||||||||||  ||||||| | |||||||||||||||||    
T  18847437 tgtttatgtcccttaactttatttaaagtatcggtttggtcccttatgttaatttaattc 18847496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 10134680 - 10134738
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||||||||||  ||||| | |||| ||||||||||||||    
T  10134680 gtttaggtcccttaactttatttaaagtatcggtttgatcctttctgttaatttaattc 10134738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 40832208 - 40832266
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||| ||||||||||||||  ||||| | |||||||||||||||||||    
T  40832208 gtttaggtcccttaattttatttaaagtatcggtttgatcctttatgttaatttaattc 40832266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 21015230 - 21015169
Alignment:
Q  133 tctgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||| |||||||||||||||||||||||||  ||||||| |||| | ||||||||||||    
T  21015230 tctgtttgggtcccttaactttatttaaagtatcggtttggtcctttcttttaatttaattc 21015169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 21015003 - 21015108
Alignment:
Q  135 tgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcatta 234  Q
    ||||| ||||||||||||||||||||||||   ||||||| | || ||||||||||||||        ||||| ||||||| ||||||||||||| ||||    
T  21015003 tgttttggtcccttaactttatttaaagtaacggtttggtcccttctgttaatttaattcaaaaaaaagttaaattttggtcccttaacttatttaatta 21015102  T
Q  235 gaatta 240  Q
    | ||||    
T  21015103 gtatta 21015108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 31933346 - 31933402
Alignment:
Q  137 tttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaatt 193  Q
    ||||| ||||||||||||||||||||||| | |||||| |||| |||||||||||||    
T  31933346 tttagatcccttaactttatttaaagtatcactttggtcctttctgttaatttaatt 31933402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 10134903 - 10134799
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattag 235  Q
    |||| ||||||||||||||||| |||||||  ||||||| |||| ||||||||||||||       |||||| ||||| | ||||| ||||||| |||||    
T  10134903 gttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaattcaaaaaaacgttaaattttgatcccttatcttatttaattag 10134804  T
Q  236 aatta 240  Q
     ||||    
T  10134803 tatta 10134799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 40832393 - 40832297
Alignment:
Q  144 cccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    |||||||||||||| |||||||  ||||||| |||| ||||||||||||||       |||||| ||||| | ||||| ||||||| ||||| ||||    
T  40832393 cccttaactttattaaaagtatcggtttggtcctttctgttaatttaattcaaaaaaacgttaaattttgatcccttatcttatttaattagtatta 40832297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 65 - 194
Target Start/End: Original strand, 55620196 - 55620323
Alignment:
Q  65 ttaaatccttttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagta 164  Q
    |||||| || ||||| || |||||||||||||||| |||| ||||| |||||||| ||| |||| || ||||||||||||||||||||||||| ||||||    
T  55620196 ttaaatgctcttttggtcccttaacttgatttcaagtatcggtttggtcccataagtaa-taaa-aagtctgtttaggtcccttaactttattaaaagta 55620293  T
Q  165 taagtttggttctttatgttaatttaattc 194  Q
    | |||||||| |||| ||||||||||||||    
T  55620294 tcagtttggtcctttctgttaatttaattc 55620323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 65 - 194
Target Start/End: Original strand, 55627500 - 55627627
Alignment:
Q  65 ttaaatccttttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagta 164  Q
    |||||| || ||||| || |||||||||||||||| |||| ||||| |||||||| ||| |||| || ||||||||||||||||||||||||| ||||||    
T  55627500 ttaaatgctcttttggtcccttaacttgatttcaagtatcggtttggtcccataagtaa-taaa-aagtctgtttaggtcccttaactttattaaaagta 55627597  T
Q  165 taagtttggttctttatgttaatttaattc 194  Q
    | |||||||| |||| ||||||||||||||    
T  55627598 tcagtttggtcctttctgttaatttaattc 55627627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 1113232 - 1113386
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||| | ||| |||||||| ||| |||| || ||||||||||||||||||||||||||||||||| ||||||||  ||| |||    
T  1113232 cttaacttgatttcaagtatcgggttggtcccataagtaa-taaa-aagtctgtttaggtcccttaactttatttaaagtatcagtttggtcgtttctgt 1113329  T
Q  184 taatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    |||||||||||       |||||| ||||| | | ||||||||||| ||||| ||||    
T  1113330 taatttaattcaaaaaaacgttaaattttgatcctttaacttatttaattagtatta 1113386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 8607795 - 8607904
Alignment:
Q  81 tctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttcttta 180  Q
    ||||||||||||||||||| |||| |||||||||||||| ||| |||| |  || ||||| ||||||||||||||||||||||||  ||||| | ||||     
T  8607795 tctcttaacttgatttcaagtatcggtttgatcccataagtaa-taaa-aggtccgtttaagtcccttaactttatttaaagtatcggtttgatcctttc 8607892  T
Q  181 tgttaatttaat 192  Q
    ||||||||||||    
T  8607893 tgttaatttaat 8607904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 55561016 - 55561148
Alignment:
Q  59 aaaggtttaaatccttttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttattt 158  Q
    |||||||||||| ||   |||||| ||||||||||||||||| ||||||||| | |||||| ||| |||| || | || | ||||| |||||||||||||    
T  55561016 aaaggtttaaatgctcgattgatcccttaacttgatttcaaacatcagtttggttccataagtaa-taaa-aagtttgctaaggtctcttaactttattt 55561113  T
Q  159 aaagtataagtttggttctttatgttaatttaatt 193  Q
    ||||||| ||||| ||| ||| |||||||||||||    
T  55561114 aaagtatcagttttgttatttctgttaatttaatt 55561148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 51399285 - 51399346
Alignment:
Q  133 tctgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||||||||||||||||||||||||||||||||  ||||||| |||| ||||||||||||||    
T  51399285 tctgtttaggtcccttaactttatttaaagtatcggtttggtcctttctgttaatttaattc 51399346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 17254791 - 17254683
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||  |||||||| ||||| |||  ||||   || |||||||||||||||||||||||||||| | ||||||||  ||| |||    
T  17254791 cttaacttgatttcaagtattggtttgatctcataagtaataaaatg--tccgtttaggtcccttaactttatttaaagtgtcagtttggtcttttctgt 17254694  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  17254693 taatttaattc 17254683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 44304277 - 44304219
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||||||||||  ||||| | |||||||||||||||||||    
T  44304277 gtttaggtcccttaactttatttaaagtatcggtttgatcctttatgttaatttaattc 44304219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 29429942 - 29430113
Alignment:
Q  65 ttaaatccttttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagta 164  Q
    |||||| || ||||| || ||||||||||||||||||||| ||||| |||  ||| |||  |||  | || |||||| |||| |||||||||||||||||    
T  29429942 ttaaatgctcttttggtcccttaacttgatttcaaatatcggtttggtcc--taagtaagaaaa--agtccgtttagatcccctaactttatttaaagta 29430037  T
Q  165 taagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    | | ||||||  ||| | ||||||||||||       |||||| ||||||| ||||||||||||| ||||| ||||    
T  29430038 tcaatttggtcttttctcttaatttaattcaaaaaaacgttaaattttggtcccttaacttatttaattagtatta 29430113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 1113522 - 1113414
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||   |||| |||||||||||  | || |  ||||||||||||||||||||| |||||||||||  ||||||| | || |||    
T  1113522 cttaacttgatttcaagtattgatttggtcccataaata--ttaaaaggtctgtttaggtcccttaacttcatttaaagtatcggtttggtcccttttgt 1113425  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  1113424 taatttaattc 1113414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 36215671 - 36215779
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||| ||||||| |||| ||||| |||||||| ||| |||| |  || |||||| | |||||||||||||||||||||  ||||||| |||| |||    
T  36215671 cttaacttaatttcaagtatcggtttggtcccataagtaa-taaa-aggtccgtttagattccttaactttatttaaagtatcggtttggtcctttctgt 36215768  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  36215769 taatttaattc 36215779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 35016983 - 35016926
Alignment:
Q  137 tttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||||||| |||||||||||||||||||| |||||| | |||| ||||||||||||||    
T  35016983 tttaggtctcttaactttatttaaagtatcagtttgatcctttctgttaatttaattc 35016926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 48018629 - 48018711
Alignment:
Q  81 tctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtat 165  Q
    |||||||||||||||| ||||||| ||||| ||||| || |||  |||||  ||||||||| |||||||| ||||||||||||||    
T  48018629 tctcttaacttgatttaaaatatcggtttggtcccaaaagtaataaaata--tctgtttagatcccttaattttatttaaagtat 48018711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 29430201 - 29430142
Alignment:
Q  135 tgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||| |||||||| |||||||||||||| |||| ||| |||| ||||||||||||||    
T  29430201 tgtttagatcccttaattttatttaaagtatcagttcggtcctttctgttaatttaattc 29430142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 51399511 - 51399407
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattag 235  Q
    |||| ||||||||||||||| ||||||||   ||||||| | |||||||||||||||||        ||||| ||||||| ||||||||||||| |||||    
T  51399511 gttttggtcccttaactttagttaaagtaacggtttggtcccttatgttaatttaattcaaaaaaatgttaaattttggtcccttaacttatttaattag 51399412  T
Q  236 aatta 240  Q
     ||||    
T  51399411 tatta 51399407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 14251268 - 14251326
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||||||||||  ||||| | |||| | ||||||||||||    
T  14251268 gtttaggtcccttaactttatttaaagtatcggtttgatcctttctattaatttaattc 14251326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 14251486 - 14251387
Alignment:
Q  141 ggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    ||||| ||||||||||| ||||||| |||||||| |||| ||||||||||||||        ||||| ||||||| ||||| ||||||| ||||| ||||    
T  14251486 ggtcctttaactttattgaaagtatcagtttggtcctttctgttaatttaattcaaaaaaatgttaaattttggtcccttatcttatttaattagtatta 14251387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 44304054 - 44304112
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||| ||||||||||||||||| |||||||  ||||||| |||| ||||||||||||||    
T  44304054 gttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaattc 44304112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 49905800 - 49905857
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaatt 193  Q
    ||||||||||||||||||||||||||||||  ||||| |  ||| |||||||||||||    
T  49905800 gtttaggtcccttaactttatttaaagtatcggtttgatcatttctgttaatttaatt 49905857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 55561283 - 55561250
Alignment:
Q  132 atctgtttaggtcccttaactttatttaaagtat 165  Q
    ||||||||||||||||||||||||||||||||||    
T  55561283 atctgtttaggtcccttaactttatttaaagtat 55561250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 35016762 - 35016865
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattag 235  Q
    |||| ||||||||||||||||| |||||||  ||||||| ||||  |||||||||||||        ||||| ||||||| ||||||||||||| |||||    
T  35016762 gttttggtcccttaactttattgaaagtatcggtttggtcctttcggttaatttaattcaaaaaat-gttaaattttggtcccttaacttatttaattag 35016860  T
Q  236 aatta 240  Q
     ||||    
T  35016861 tatta 35016865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 51024519 - 51024623
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattag 235  Q
    ||||| || ||||||| ||||||||||||| ||||| || |||| |||||||||||||        |||||| ||||||| |||||| |||||| |||||    
T  51024519 gtttaagttccttaacattatttaaagtatcagtttagtcctttctgttaatttaattaaaaaaaacgttaaattttggtcccttaatttatttaattag 51024618  T
Q  236 aatta 240  Q
     ||||    
T  51024619 tatta 51024623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 24039544 - 24039486
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||| ||||||  ||||  |  ||||||||||||||||||    
T  24039544 gtttaggtcccttaactttattttaagtatcggtttaatcatttatgttaatttaattc 24039486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 39277604 - 39277712
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||| ||||||| |||||||||| |||||||| ||| |||| || || |||||||||||||||||||||||||||||| |||||||| |||| |||    
T  39277604 cttaacttaatttcaagtatcagtttggtcccataagtaa-taaa-aagtccgtttaggtcccttaactttatttaaagtatcagtttggtcctttctgt 39277701  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  39277702 taatttaattc 39277712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 47421913 - 47422016
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    ||||||||||||||||||||| ||||| |||||||| |||  ||||   ||||||||||||||||||||||||||||| ||| |||||||| ||||||||    
T  47421913 cttaacttgatttcaaatatcggtttggtcccataagtaataaaatg--tctgtttaggtcccttaactttatttaaattatcagtttggtcctttatgt 47422010  T
Q  184 taattt 189  Q
    ||||||    
T  47422011 taattt 47422016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 19920520 - 19920635
Alignment:
Q  77 ttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttc 176  Q
    |||||| |||||||||||||||| |||| ||||| |||||||| ||| |||| | ||| |||||||||||||||||||||||||||||| ||||||||      
T  19920520 ttgatcccttaacttgatttcaagtatcggtttggtcccataagtaa-taaa-agatccgtttaggtcccttaactttatttaaagtatcagtttggtct 19920617  T
Q  177 tttatgttaatttaattc 194  Q
     |||||||||||||||||    
T  19920618 cttatgttaatttaattc 19920635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 45823139 - 45823025
Alignment:
Q  77 ttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttc 176  Q
    |||||| ||||||||||||||||||||  ||||| |||||||| ||| |||| || || ||||||||||||||||||||||||||||||  ||||||| |    
T  45823139 ttgatcccttaacttgatttcaaatattggtttggtcccataagtaa-taaa-aagtccgtttaggtcccttaactttatttaaagtatcggtttggtcc 45823042  T
Q  177 tttatgttaatttaatt 193  Q
    ||| |||||||||||||    
T  45823041 tttctgttaatttaatt 45823025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 7714194 - 7714302
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    ||||||||||||| || |||| ||||| |||||||| ||| |||| || ||||| ||||||||||||||||||||||||||| |||||||| |||| |||    
T  7714194 cttaacttgattttaagtatcggtttggtcccataagtaa-taaa-aagtctgtctaggtcccttaactttatttaaagtatcagtttggtcctttctgt 7714291  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  7714292 taatttaattc 7714302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 39277927 - 39277820
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||| ||||| |||||||| ||| |||| || || ||||||||||||||||||||||||||||||  ||||||| |||| |||    
T  39277927 cttaacttgatttcaagtatcggtttggtcccataagtaa-taaa-aagtccgtttaggtcccttaactttatttaaagtatcggtttggtcctttctgt 39277830  T
Q  184 taatttaatt 193  Q
    ||||||||||    
T  39277829 taatttaatt 39277820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 16959202 - 16959040
Alignment:
Q  65 ttaaatccttttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagta 164  Q
    |||||| || ||||||||  || |||||||||||| |||| ||||| |||||||| ||| |||| || | |||||||||||||||||||||||||||| |    
T  16959202 ttaaatgctcttttgatcctttgacttgatttcaagtatcggtttggtcccataagtaa-taaa-aattatgtttaggtcccttaactttatttaaagca 16959105  T
Q  165 taagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttattt 229  Q
    | |||||| | |||||||| ||||||||||       |||||| |||||||  ||||||||||||    
T  16959104 tcagtttgatcctttatgtcaatttaattcaaaagaacgttaaattttggtctcttaacttattt 16959040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 235
Target Start/End: Complemental strand, 28990643 - 28990494
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||  ||||| |||||||| ||| |||| |  || |||||||||||||||||| ||||||||||| |||||||| |||| |||    
T  28990643 cttaacttgatttcaagtattggtttggtcccataagtaa-taaa-aggtccgtttaggtcccttaacttcatttaaagtatcagtttggtcctttctgt 28990546  T
Q  184 taatttaattcnnnnnnncgttaagttttggttccttaacttatttcattag 235  Q
    |||||||||||       |||||| ||||||| | ||||||||||| |||||    
T  28990545 taatttaattcaaaaaaacgttaaattttggtccattaacttatttaattag 28990494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 27334367 - 27334521
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| ||||  |||| || ||||| ||| |||| | ||| |||||||||||||||||||||||||||||   ||||||| | || |||    
T  27334367 cttaacttgatttcaagtatcgatttggtctcataagtaa-taaa-agatccgtttaggtcccttaactttatttaaagtaatggtttggtcccttctgt 27334464  T
Q  184 taatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    |||||||||||       |||||| ||||||||| ||||||||||| ||||| ||||    
T  27334465 taatttaattcaaaaaaacgttaaattttggttctttaacttatttaattagtatta 27334521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 47422206 - 47422099
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||| ||||| |||||||| |||   || |  |||||||||||||||||||||||||||||||||  |||||||  ||| |||    
T  47422206 cttaacttgatttcaagtatcggtttggtcccataagtaat--aagaggtctgtttaggtcccttaactttatttaaagtatcggtttggtcatttctgt 47422109  T
Q  184 taatttaatt 193  Q
    ||||||||||    
T  47422108 taatttaatt 47422099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 10394152 - 10394300
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||| ||||| |||||||| ||| ||||    || |||||| |||||||||||||||||||||||  ||||||| |||| |||    
T  10394152 cttaacttgatttcaagtatcggtttggtcccataagtaa-taaaaggttc-gtttagatcccttaactttatttaaagtatcggtttggtcctttctgt 10394249  T
Q  184 taatttaattcnnnnnnncgttaagttttggttccttaacttatttcatta 234  Q
    |||||||||||        ||||| ||||| ||||||||||||||| ||||    
T  10394250 taatttaattcaaaaaaatgttaaattttgcttccttaacttatttaatta 10394300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 194
Target Start/End: Original strand, 30049912 - 30050045
Alignment:
Q  59 aaaggtttaaatccttttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttattt 158  Q
    |||||||||||| || ||||| || |||||||| ||||||| |||| ||||| || ||||  ||| |||| || || ||||  |||||||||||||||||    
T  30049912 aaaggtttaaatgctcttttggtcccttaactttatttcaagtatcggtttggtctcatatgtaa-taaa-aagtccgtttgagtcccttaactttattt 30050009  T
Q  159 aaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||| ||||||||  ||| ||||||||||||||    
T  30050010 aaagtatcagtttggtcttttctgttaatttaattc 30050045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 28990321 - 28990429
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||| ||||| |||||||| ||| |||| |  || | ||||||||||||||||||||||||||||  || |||| |||| |||    
T  28990321 cttaacttgatttcaagtatcggtttggtcccataagtaa-taaa-aggtccgcttaggtcccttaactttatttaaagtatcggtctggtcctttttgt 28990418  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  28990419 taatttaattc 28990429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 45822809 - 45822917
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||| ||||||| ||||| |||| |||||||| ||| |||| || || |||||||| ||||||||||||||||||||| || || || |||| |||    
T  45822809 cttaacttaatttcaagtatcaatttggtcccataagtaa-taaa-aagtccgtttaggttccttaactttatttaaagtatcagcttagtcctttctgt 45822906  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  45822907 taatttaattc 45822917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 193
Target Start/End: Complemental strand, 52285406 - 52285290
Alignment:
Q  75 ttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggt 174  Q
    ||||| || ||||||||||||| || ||||| |||| ||| |||| ||| |||| |  |||||||||||||||||||||||||||||||||  |||||||    
T  52285406 ttttggtcccttaacttgattttaagtatcaatttggtcctataagtaa-taaa-aggtctgtttaggtcccttaactttatttaaagtatccgtttggt 52285309  T
Q  175 tctttatgttaatttaatt 193  Q
      ||| |||||||||||||    
T  52285308 catttctgttaatttaatt 52285290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 10394475 - 10394367
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||   |||| |||||||||||  | || |  || ||||||||||||||||||||||||||||||  ||||||| | || |||    
T  10394475 cttaacttgatttcaagtattgttttggtcccataaata--ttaaaaggtccgtttaggtcccttaactttatttaaagtatcggtttggtcccttttgt 10394378  T
Q  184 taatttaattc 194  Q
    |||||||||||    
T  10394377 taatttaattc 10394367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 16958858 - 16958955
Alignment:
Q  78 tgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttct 177  Q
    ||||| |||||||||||||||| | || ||||| |||||||||||| |||| |  ||  ||||||||||||||||||||||||| ||| |||||||||||    
T  16958858 tgatcccttaacttgatttcaagtgtcggtttggtcccataaataa-taaa-aggtccatttaggtcccttaactttatttaaattatcagtttggttct 16958955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 10719619 - 10719561
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||||||||||  ||||| | |||| ||||||||||||||    
T  10719619 gtttaggtcccttaactttatttaaagtatcggtttgatcctttctgttaatttaattc 10719561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 35814382 - 35814325
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaatt 193  Q
    |||||||||||||||||||||||||||||| |||||| | |||| || ||||||||||    
T  35814382 gtttaggtcccttaactttatttaaagtatcagtttgatcctttctgataatttaatt 35814325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 36076907 - 36077061
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||| | |||||||||||| ||| ||||    || ||||||||||||||||||||||||||||||  |||||||   || |||    
T  36076907 cttaacttgatttcaagtatcggcttgatcccataagtaa-taaaaggttc-gtttaggtcccttaactttatttaaagtatcggtttggtctcttctgt 36077004  T
Q  184 taatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    |||| |||||        |||||| ||||||| |||||||||| || ||||| ||||    
T  36077005 taatataatttaaaaaaacgttaaattttggtcccttaacttaattaattagtatta 36077061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 52285126 - 52285228
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattag 235  Q
    |||||||||| ||||||||||||||||||| |||||| | |||| ||||||||||||||        ||||| ||||||| ||||||||||||| |||||    
T  52285126 gtttaggtcc-ttaactttatttaaagtatcagtttgatcctttctgttaatttaattcaaaaaat-gttaaattttggtcccttaacttatttaattag 52285223  T
Q  236 aatta 240  Q
     ||||    
T  52285224 tatta 52285228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 7714466 - 7714410
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaatt 193  Q
    ||||||||||||||| |||||||||| ||| |||||||| |||| |||||||||||||    
T  7714466 gtttaggtcccttaagtttatttaaa-tatcagtttggtcctttctgttaatttaatt 7714410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 15158578 - 15158481
Alignment:
Q  143 tcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    |||||||||||||||||||| || | |||||| |||| ||||||||||| ||        ||||||||||| | ||||||||||||| ||||| ||||    
T  15158578 tcccttaactttatttaaagcattaatttggtcctttctgttaatttaagtcaaaaaaatgttaagttttgatcccttaacttatttaattagtatta 15158481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 36077199 - 36077121
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagta 164  Q
    |||||||||||||||| |||| ||||| |||||||| ||| |||| |  ||||||||||| | ||||||||||||||||||    
T  36077199 cttaacttgatttcaagtatcggtttgctcccataagtaa-taaa-aggtctgtttaggttcattaactttatttaaagta 36077121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 10719436 - 10719532
Alignment:
Q  144 cccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    |||||||||||||| |||||||  ||||||| |||| ||||||||||||||       |||||| ||||| | ||||| ||||||| ||||| ||||    
T  10719436 cccttaactttattaaaagtatcggtttggtcctttttgttaatttaattcaaaaaaacgttaaattttgatcccttatcttatttaattagtatta 10719532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 8417562 - 8417735
Alignment:
Q  65 ttaaatccttttttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagta 164  Q
    |||||| || ||||| || |||||||||||||||| |||| |||||||| || || ||| |||| |  || |||||||||||||||||||||||||||||    
T  8417562 ttaaatgctcttttggtcccttaacttgatttcaagtatcggtttgatctcacaagtaa-taaa-agttccgtttaggtcccttaactttatttaaagta 8417659  T
Q  165 taagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    | ||| ||||  ||| ||||||||||||||       |||||| |||||||  |||||||||||| ||||| ||||    
T  8417660 tcagtctggtcatttctgttaatttaattcaaaagaacgttaaattttggtctcttaacttatttaattagtatta 8417735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 9990262 - 9990161
Alignment:
Q  90 ttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaattt 189  Q
    ||||||| || ||||||||||||  |||||||||  ||| |  |||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||    
T  9990262 ttgattttaagtatcagtttgatttcataaataatgaaaga--tctgtttaggtcccttaactttatttaaagtatcggattggtcctttatgttaattt 9990165  T
Q  190 aatt 193  Q
    ||||    
T  9990164 aatt 9990161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 14662657 - 14662599
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||||||||||  ||||||| |||| ||||||||||||||    
T  14662657 gtttaggtcccttaactttatttaaagtatcggtttggtcctttctgttaatttaattc 14662599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 35463861 - 35463800
Alignment:
Q  133 tctgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||| |||||||||||||||||||||||||  ||||||| |||| ||||||||||||||    
T  35463861 tctgtttcggtcccttaactttatttaaagtatcggtttggtcctttctgttaatttaattc 35463800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 9990026 - 9990085
Alignment:
Q  135 tgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||||||||||||||||||||||||||||||  ||||| | | || ||||||||||||||    
T  9990026 tgtttaggtcccttaactttatttaaagtatcggtttgatcccttctgttaatttaattc 9990085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 17115614 - 17115510
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattag 235  Q
    |||| ||||||||||||| ||| ||||||| |||||||| |||| ||||||||||||||       |||||| ||||| | ||||| ||||||| |||||    
T  17115614 gttttggtcccttaacttgattgaaagtatcagtttggtcctttctgttaatttaattcaaacaaacgttaaattttgatcccttatcttatttaattag 17115515  T
Q  236 aatta 240  Q
     ||||    
T  17115514 tatta 17115510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 18508844 - 18508759
Alignment:
Q  107 tttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||| |||||||||||| |||| || ||||||||||| |||||||||||||||||||||  ||||| |  ||| ||||||||||||||    
T  18508844 tttggtcccataaataa-taaa-aagtctgtttaggttccttaactttatttaaagtatcggtttgatcttttctgttaatttaattc 18508759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 240
Target Start/End: Complemental strand, 18968847 - 18968698
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||| |||||||||||||||||| |||| |  | ||||| | |||||||||||||| |||||||     || ||  |||||||    
T  18968847 cttaacttgatttcaagtatcggtttgatcccataaataa-taaa-aggtatgtttggatcccttaactttatataaagta-----tttgtcatttatgt 18968755  T
Q  184 taatttaattcnnnnnnncgttaagttttggttccttaacttatttcattagaatta 240  Q
    |||||||||||       |||||| ||||||| |||||||| |||| ||||| ||||    
T  18968754 taatttaattcaaaaaaacgttaaattttggtcccttaactgatttaattagtatta 18968698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 18968581 - 18968639
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||||||||||  ||||||| | || |||| |||||||||    
T  18968581 gtttaggtcccttaactttatttaaagtatcggtttggtcccttttgttgatttaattc 18968639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 8417849 - 8417796
Alignment:
Q  141 ggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||||||||| |||||||||||||| |||||||| ||||  |||||||||||||    
T  8417849 ggtcccttaattttatttaaagtattagtttggtcctttcagttaatttaattc 8417796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 1983536 - 1983486
Alignment:
Q  144 cccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||||||||||||| |||||||  ||||||| |||| ||||||||||||||    
T  1983536 cccttaactttattaaaagtatcggtttggtcctttctgttaatttaattc 1983486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 35463631 - 35463692
Alignment:
Q  133 tctgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||| ||||||||||||||| ||||||||   ||||||| | || ||||||||||||||    
T  35463631 tctgttttggtcccttaactttagttaaagtaacggtttggtcccttctgttaatttaattc 35463692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 235
Target Start/End: Original strand, 12701950 - 12702098
Alignment:
Q  85 ttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgtt 184  Q
    ||||||||||||||| |||| ||||| |||||||| ||| |||| |  || |||||||||||||||||| |||||||||||  ||||||| |||| ||||    
T  12701950 ttaacttgatttcaagtatcggtttggtcccataagtaa-taaa-aggtccgtttaggtcccttaacttcatttaaagtattggtttggtcctttctgtt 12702047  T
Q  185 aatttaattcnnnnnnncgttaagttttggttccttaacttatttcattag 235  Q
    ||||||||||        ||||| ||||||| ||||||||||||| |||||    
T  12702048 aatttaattcaaaaaaatgttaaattttggtcccttaacttatttaattag 12702098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 25945894 - 25945956
Alignment:
Q  132 atctgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||||||||||||||||||||||||||||||||| |||||| | ||||  |||||||||||||    
T  25945894 atctgtttaggtcccttaactttatttaaagtatcagtttgatcctttcagttaatttaattc 25945956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 38978910 - 38978852
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||| ||||||||||||||||||||||||| |||||||| |||| ||||||||||||||    
T  38978910 gtttgggtcccttaactttatttaaagtatcagtttggtcctttctgttaatttaattc 38978852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 16581409 - 16581467
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||||||||||  ||||| | |||| ||||||||||||||    
T  16581409 gtttaggtcccttaactttatttaaagtatcggtttgatcctttctgttaatttaattc 16581467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 21304343 - 21304457
Alignment:
Q  77 ttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttc 176  Q
    |||||| ||||||||||||||||||||| ||||| |||||||| |||  ||||   |  |||||| || |||||||||||||||| ||| ||||| || |    
T  21304343 ttgatcccttaacttgatttcaaatatcggtttggtcccataagtaataaaat--gttcgtttagatcgcttaactttatttaaa-tatcagtttagtcc 21304439  T
Q  177 tttatgttaatttaattc 194  Q
    ||| ||||||||||||||    
T  21304440 tttctgttaatttaattc 21304457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 36065286 - 36065344
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    ||||||||||||||||||||||||||||||  ||||| | |||| ||||||||||||||    
T  36065286 gtttaggtcccttaactttatttaaagtatcggtttgatcctttctgttaatttaattc 36065344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 10373310 - 10373252
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||| ||||||||||||||||| |||||||  ||||||| |||| ||||||||||||||    
T  10373310 gttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaattc 10373252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 12261119 - 12261020
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcattag 235  Q
    |||||| ||||||||||||||||||||| |  | ||||| |||| | ||||||||||||       |||||| ||||||| ||||||||||||| |||||    
T  12261119 gtttagctcccttaactttatttaaagtgtcggcttggtcctttcttttaatttaattcaaaaaaacgttaaattttggtcccttaacttatttaattag 12261020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 12702271 - 12702163
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    ||||||||||| |||| |||| ||||| |||||||| ||| |||| |  || |||||||||||||||||||||||||| |||  || |||| |||| |||    
T  12702271 cttaacttgatatcaagtatcggtttggtcccataagtaa-taaa-aggtccgtttaggtcccttaactttatttaaaatatcggtctggtcctttttgt 12702174  T
Q  184 taatttaattc 194  Q
    |||||| ||||    
T  12702173 taatttcattc 12702163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 36065509 - 36065451
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||| ||||||||||||||||| |||||||  ||||||| |||| ||||||||||||||    
T  36065509 gttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaattc 36065451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 16203738 - 16203680
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||| ||||||||||||||||| |||||||  ||||| | |||| ||||||||||||||    
T  16203738 gttttggtcccttaactttattgaaagtatcggtttgatcctttctgttaatttaattc 16203680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 25946124 - 25946017
Alignment:
Q  133 tctgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattcnnnnnnncgttaagttttggttccttaacttatttcat 232  Q
    ||||||| ||||||||||||||||  |||||||  ||||||| ||||  |||||||||||||        ||||| ||||||| ||||| ||||||| ||    
T  25946124 tctgttttggtcccttaactttatagaaagtattggtttggtcctttcggttaatttaattcaaaaaaatgttaaattttggtcccttatcttatttaat 25946025  T
Q  233 tagaatta 240  Q
    ||| ||||    
T  25946024 tagtatta 25946017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 1211740 - 1211597
Alignment:
Q  84 cttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttctttatgt 183  Q
    |||||||||||||||| |||| ||||| || ||||| ||| |||| | |||||||||| |||||||||||||||||||||||  || |||| | || |||    
T  1211740 cttaacttgatttcaagtatctgtttggtctcataagtaa-taaa-agatctgtttagatcccttaactttatttaaagtattggtatggtccattttgt 1211643  T
Q  184 taatttaattcnnnnnnncgttaagttttggttccttaacttattt 229  Q
    ||||||||||        |||||| ||||||| |||||||||||||    
T  1211642 taatttaattaaaaaaaacgttaaattttggtcccttaacttattt 1211597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 959303 - 959246
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaatt 193  Q
    |||||||||||||||||||||||||||||| |||||  | |||| |||||||||||||    
T  959303 gtttaggtcccttaactttatttaaagtatcagtttaatcctttctgttaatttaatt 959246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 1211409 - 1211523
Alignment:
Q  77 ttgatctcttaacttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcccttaactttatttaaagtataagtttggttc 176  Q
    |||||| ||||||||||||| || ||||||||||||||||||  | |||||| |  || |||||||||  |||| ||||||||||||||  ||||||| |    
T  1211409 ttgatcccttaacttgatttgaagtatcagtttgatcccatatgt-aataaa-aggtccgtttaggtcatttaattttatttaaagtatcggtttggtcc 1211506  T
Q  177 tttatgttaatttaatt 193  Q
     || |||||||||||||    
T  1211507 cttttgttaatttaatt 1211523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 26034 - 26093
Alignment:
Q  135 tgtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||||| ||||||||||||||||||||||||  ||||| | |||| ||||||||||||||    
T  26034 tgtttaagtcccttaactttatttaaagtatcggtttgatcctttctgttaatttaattc 26093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 26258 - 26200
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaattc 194  Q
    |||| ||||||||||||||||| |||||||  ||||||| |||| ||||||||||||||    
T  26258 gttttggtcccttaactttattgaaagtatcggtttggtcctttctgttaatttaattc 26200  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 233727 - 233672
Alignment:
Q  136 gtttaggtcccttaactttatttaaagtataagtttggttctttatgttaatttaa 191  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||| | |||||||||    
T  233727 gtttagatcccttaactttatttaaagtatcagtttggttttttctattaatttaa 233672  T

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Target: scaffold0130 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 25592 - 25490
Alignment:
Q  90 ttgatttcaaatatcagtttgatcccataaataaataaataaatctgtttaggtcc-cttaactttatttaaagtataagtttggttctttatgttaatt 188  Q
    |||||||||| ||||||||||||| ||||| | |||||||  ||| ||||||||||  |||||||| ||||||||||  ||||| | | || ||||||||    
T  25592 ttgatttcaagtatcagtttgatctcataagt-aataaat-gatccgtttaggtccttttaactttgtttaaagtatcggtttgatcccttctgttaatt 25495  T
Q  189 taatt 193  Q
    |||||    
T  25494 taatt 25490  T

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