View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2194_high_24 (Length: 227)
Name: NF2194_high_24
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2194_high_24 |
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| [»] scaffold0114 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 49130727 - 49130838
Alignment:
| Q |
86 |
tctaaccaaagcgggaatcaccactcaatagtgcacttttcatgcaatcatgtcaataaaaaatttgaagttactttccataatgagatgtgatatacaa |
185 |
Q |
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| T |
49130727 |
tctaaccaaagcgggaatcaccactgaatagttcacttttcatgcaatcatgtcaataaaaaatttgaagttactttccataatgagatgtgatatacaa |
49130826 |
T |
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| Q |
186 |
tctctccaaacc |
197 |
Q |
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| T |
49130827 |
tctctccaaacc |
49130838 |
T |
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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 52606600 - 52606550
Alignment:
| Q |
14 |
ctttctgtctttcttcaatctttcctactactttcaccctaaacaaacaga |
64 |
Q |
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| T |
52606600 |
ctttctgtcctccttcaatctttcctactactttcacccaaaacaaacaga |
52606550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 27301059 - 27301007
Alignment:
| Q |
10 |
tcttctttctgtctttcttcaatctttcctactactttcaccctaaacaaaca |
62 |
Q |
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| T |
27301059 |
tcttctttccatccttcttcaatctttccttgtactttcacccaaaacaaaca |
27301007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 38161 - 38217
Alignment:
| Q |
14 |
ctttctgtctttcttcaatctttcctactactttcaccctaaacaaacagatcctaa |
70 |
Q |
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| T |
38161 |
ctttctatccttcttcaatctttcctactactttcacccaaaataaacagaccctaa |
38217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 42034864 - 42034816
Alignment:
| Q |
14 |
ctttctgtctttcttcaatctttcctactactttcaccctaaacaaaca |
62 |
Q |
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| T |
42034864 |
ctttctatccttcttcaatctttcctactactttcacccaaaacaaaca |
42034816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 8232671 - 8232720
Alignment:
| Q |
14 |
ctttctgtctttcttcaatctttcctactactttcaccctaaacaaacag |
63 |
Q |
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| T |
8232671 |
ctttctatccttcctcaatctttccttctactttcacccaaaacaaacag |
8232720 |
T |
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