View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2194_high_25 (Length: 221)
Name: NF2194_high_25
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2194_high_25 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 50964961 - 50965153
Alignment:
| Q |
12 |
atcatcagctgggtgccaaaatctgttaaaaaaccaattggaatcagcctcatcagaataaccattttgatttctgtgatagttatagtgagcatgtgtt |
111 |
Q |
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| T |
50964961 |
atcatcaactgggtgccaaaatctgttaaaaaaccaattggaatcaacctcatcagaataaccattttgatttctgtgatagttatagtgagcatgtgtt |
50965060 |
T |
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| Q |
112 |
ctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgctaatgtactctgcctgtggttctgacatgttggtttctatgct |
204 |
Q |
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| T |
50965061 |
ctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgctaatgtactctgcctgtggttctgacatgttggtttctatgct |
50965153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 50980412 - 50980602
Alignment:
| Q |
12 |
atcatcagctgggtgccaaaatctgttaaaaaaccaattggaatcagcctcatcagaataaccattttgatttctgtgatagttatagtgagcatgtgtt |
111 |
Q |
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| T |
50980412 |
atcatcaactggatgccaaaatctgttgaaaaaccaatgggaatcagcctcaaccgaataaccatcttgatttctgtgccagctatagtgagcatgtgtt |
50980511 |
T |
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| Q |
112 |
ctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgctaatgtactctgcctgtggttctgacatgttggtttctatgc |
203 |
Q |
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| T |
50980512 |
ctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgctga-gtactctggctgtggttctgtcatgttggtttccatgc |
50980602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 13641434 - 13641257
Alignment:
| Q |
12 |
atcatcagctgggtgccaaaatctgttaaaaaaccaattggaatcagcctcatcagaataaccattttgatttctgtgatagttatagtgagcatgtgtt |
111 |
Q |
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| T |
13641434 |
atcatcaactgggtgccaaaatctgttgaagaaccaatgagaatcagcctcaacagagtaaccatcttgattcctatgccagctgtagtgagcatgtgtt |
13641335 |
T |
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| Q |
112 |
ctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgctaatgtactctgcctgtggttctgacatg |
190 |
Q |
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| T |
13641334 |
ctgttctttatgtcaaaaatggcatgtccaaagctggcctctctgtatgctga-gtactctggttgtggttctgtcatg |
13641257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 11813 - 11664
Alignment:
| Q |
12 |
atcatcagctgggtgccaaaatctgttaaaaaaccaattggaatcagcctcatcagaataaccattttgatttctgtgatagttatagtgagcatgtgtt |
111 |
Q |
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||||||| | |||| |||||||||||| ||||||||| ||||||| || | ||| || ||||| ||||||||| || || |||||| ||||||||| |
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| T |
11813 |
atcatcaaccgggttccaaaatctgttgaaaaaccaaagggaatcactcttaacagcatcaccatcttgatttctatgccagctatagtaagcatgtgtc |
11714 |
T |
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| Q |
112 |
ctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgc |
161 |
Q |
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| T |
11713 |
ctattctttatgtcaaaaattgcatgtccaaagctggcttctctaaatgc |
11664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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