View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2194_high_27 (Length: 215)
Name: NF2194_high_27
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2194_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 47425905 - 47426089
Alignment:
| Q |
21 |
agtagtgtaaagccaaaactagaaaaacatatattaaagccttttctcactaggtatttaaattttttaattctccagatttggacgattatgttagccg |
120 |
Q |
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| T |
47425905 |
agtagtataaagccaaaactagaaaaacatatattaaagccttttctcactaggtatttaaattttttaattctccagatttggacgattatgttagctg |
47426004 |
T |
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| Q |
121 |
gaagttgctataaattcattgtgccga--atgatgtcatactaatcaaatgtaaaaaggatatcatatgtaatttggttgttcat |
203 |
Q |
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| T |
47426005 |
gaagttgctataaattcattgtgccgaatatgatgtcatactaatcaaatgtaaaaaggatatcatacgtaatttggttgttcat |
47426089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 50432185 - 50432303
Alignment:
| Q |
86 |
tttaattctccagatttggacgattatgttagccggaagttgctataaattcattgtgccgaatgatgtcatactaa-tcaaatgtaaaaaggatatcat |
184 |
Q |
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||||||| |||| |||| || ||||| || || |||| |||||||||||||||||||| ||| ||||||||||||| | |||| || ||||||||||| |
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| T |
50432185 |
tttaattttccatatttaaactattatattggctggaaattgctataaattcattgtgctgaacgatgtcatactaattaaaatatatgaaggatatcat |
50432284 |
T |
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| Q |
185 |
atgtaatttggttgttcat |
203 |
Q |
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| T |
50432285 |
gcgaaatttggttcttcat |
50432303 |
T |
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