View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2194_low_1 (Length: 784)
Name: NF2194_low_1
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2194_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 577; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 24 - 773
Target Start/End: Complemental strand, 5775046 - 5774304
Alignment:
| Q |
24 |
gtgttttcggaggatgaaatatcaaagctgtataggatccggaagaaggtgatggagatgcttcgtgacaggaattacctcgtaggagatttcgaggttt |
123 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||||||||||| |||||| |
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| T |
5775046 |
gtgttttcggaggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggtta |
5774947 |
T |
|
| Q |
124 |
gtatgtcaaaacaagagttcaaggagacatattgtgagaatttgaagagagaagaccttgtcatcaagaaagccaaaaaagacaatccctctgaccagat |
223 |
Q |
| |
|
||||| ||| ||||||||||||||| |||| | ||| | |||| |||||||||||||||||||| || || ||||| |||||||||||||||||||| |
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| T |
5774946 |
acatgtcgaaagaagagttcaaggagaaatatggggagcacatgaatagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagat |
5774847 |
T |
|
| Q |
224 |
ttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatcgtt |
323 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774846 |
ttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatcgtt |
5774747 |
T |
|
| Q |
324 |
tgccagaccagccttactaacatggcatggaacagtatctctcagttcgactccaaatatcatttggaagtttttcaggtaattcatcattcgatcgatc |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
5774746 |
tgccagaccagccttactaacatggcatggaacagtatctctcagttcgactccaaatttcatttggaagtttttcaggtaattcatca----atcgatc |
5774651 |
T |
|
| Q |
424 |
gatcaatcaaattctgtggtggttgtttatggttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagatatca |
523 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774650 |
aatcaatcaaattctgtggtggttgtttatggttgaggtaactgttgttagtgtatgcgtgcttgcaggaggctgaattgctggttaatgtaagatatca |
5774551 |
T |
|
| Q |
524 |
caagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttat-nnnnnnnn |
622 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774550 |
caagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttataaaaaggaa |
5774451 |
T |
|
| Q |
623 |
ttgtggaaattttgtgttatttagaatgtaactaatcgaatgagtaaagttatatatataatagtatttcacctaggcatttgaaaaatttctgcacacg |
722 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774450 |
ttgtggaaattttgtgttatttagaatgtaactaatcgaatgagtaaagt----tatataatagtatttcacctaggcatttgaaaaatttctgcacaca |
5774355 |
T |
|
| Q |
723 |
cacatgtgcttcatctctgatttttcacctttcttctttccatgatgatgt |
773 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5774354 |
cacatgtgcttcatctctgatttttaacctttcttctttccatgatgatgt |
5774304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 21 - 668
Target Start/End: Complemental strand, 5768769 - 5768137
Alignment:
| Q |
21 |
atggtgttttcggaggatgaaatatcaaagctgtataggatccggaagaaggtgatggagatgcttcgtgacaggaattacctcgtaggagatttcgagg |
120 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||||||||||| |||| |
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| T |
5768769 |
atggtgttttcggaggatgaaatatctaagctgtataggatccggaagacggtgatggagatgcttagagataggaattacctcgtaggagattttgagg |
5768670 |
T |
|
| Q |
121 |
tttgtatgtcaaaacaagagttcaaggagacatattgtgagaatttgaagagagaagaccttgtcatcaagaaagccaaaaaagacaatccctctgacca |
220 |
Q |
| |
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|| ||||| ||| ||||||||||||||| |||| | ||| | |||| |||||||||||||||||||| || || ||||| ||||||||||||||||| |
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| T |
5768669 |
ttaacatgtcgaaagaagagttcaaggagaaatatggggagcacatgaatagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgacca |
5768570 |
T |
|
| Q |
221 |
gatttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||| |
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| T |
5768569 |
gatttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttgcaccaaacgtatgaactccgagaatgtctacagagccatcatc |
5768470 |
T |
|
| Q |
321 |
gtttgccagaccagccttactaacatggcatggaacagtatctctcagttcgactccaaatatcatttggaagtttttcaggtaattcatcattcgatcg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
5768469 |
gtttgccagaccagccttactaacatggca---------ctctctgaaatcgactccaaatttcatttggaagtttttcaggtaattcatca----atcc |
5768383 |
T |
|
| Q |
421 |
atcgatcaatcaaattctgtggtggttgtttatggttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagata |
520 |
Q |
| |
|
||| |||||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||| |||| |||||||||||||||||||||| |||||||| |
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|
| T |
5768382 |
atcaatcaatcaaattttgtggtggttgttaatggttgaggtaaccgttgttagtgtatgcgttcttgaaggaggctgaattgctggttaacgtaagata |
5768283 |
T |
|
| Q |
521 |
tcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttatnnnnnn |
620 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |
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| T |
5768282 |
tcacgagcttgtgccagaacatcaggtgctgaccgacaatgagaagaaaaccttactcgagagatacaccgttaaagaaactcaggtcagttataaataa |
5768183 |
T |
|
| Q |
621 |
nnttgtggaaattttgtgttatttagaatgtaactaatcgaatgagta |
668 |
Q |
| |
|
||| |||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
5768182 |
aattgatgaaa--ttgtgttatttagaatgtgactaatcgaatgagta |
5768137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 343
Target Start/End: Complemental strand, 5775424 - 5775102
Alignment:
| Q |
21 |
atggtgttttcggaggatgaaatatcaaagctgtataggatccggaagaaggtgatggagatgcttcgtgacaggaattacctcgtaggagatttcgagg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5775424 |
atggtgttttcggaggatgaaatatcaaagctgtataggatccggaagaaggtgatggagatgcttcgcgacaggaattacctcgtaggagatttcgagg |
5775325 |
T |
|
| Q |
121 |
tttgtatgtcaaaacaagagttcaaggagacatattgtgagaatttgaagagagaagaccttgtcatcaagaaagccaaaaaagacaatccctctgacca |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5775324 |
tttgtatgtcaaaacaagagttcaaggagacatatggtgagaacttgaagagagaagaccttgtcatcaagaaagccaaaaaagacaatccctctgacca |
5775225 |
T |
|
| Q |
221 |
gatttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatc |
320 |
Q |
| |
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||||||||| ||||| || ||| |||| ||||||| |||||||||||| |||||||||||||| || ||| ||| || ||||||||||| |||||| || |
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| T |
5775224 |
gatttatgtgttctttcctgagaatgataaggttgacgtccacaccttaaggacttacaccaatcgtatgtcctccgacaatgtctacagagccatcgtc |
5775125 |
T |
|
| Q |
321 |
gtttgccagaccagccttactaa |
343 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
5775124 |
gtttgccagaccagccttactaa |
5775102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 490 - 611
Target Start/End: Original strand, 465679 - 465800
Alignment:
| Q |
490 |
aggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacac |
589 |
Q |
| |
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||||||| || |||||||||||| ||| | | || ||||||||| ||||||||| | || | ||||| |||||||||||| | |||||||||||||| |
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| T |
465679 |
aggaggcagagttgctggttaatataaaagagcatgtgcttgtgcctgaacatcagattctcaatgacaccgagaagaaaaccttgcttgagagatacac |
465778 |
T |
|
| Q |
590 |
tgttaaagaaactcaggtcagt |
611 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
465779 |
tgtcaaggaaactcaggtcagt |
465800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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