View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2194_low_12 (Length: 327)

Name: NF2194_low_12
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2194_low_12
NF2194_low_12
[»] chr5 (4 HSPs)
chr5 (9-193)||(28385569-28385753)
chr5 (9-193)||(12540920-12541104)
chr5 (238-304)||(28385458-28385524)
chr5 (242-304)||(12540809-12540871)
[»] chr7 (2 HSPs)
chr7 (18-190)||(3417296-3417468)
chr7 (242-304)||(3417520-3417582)
[»] chr2 (4 HSPs)
chr2 (9-193)||(13440435-13440619)
chr2 (11-193)||(13448598-13448780)
chr2 (43-191)||(13455071-13455219)
chr2 (244-304)||(13448487-13448547)
[»] chr4 (5 HSPs)
chr4 (78-193)||(48958382-48958497)
chr4 (78-193)||(48912171-48912286)
chr4 (114-188)||(48974349-48974423)
chr4 (247-302)||(48965455-48965510)
chr4 (124-170)||(48965587-48965633)
[»] chr6 (3 HSPs)
chr6 (9-191)||(12589926-12590108)
chr6 (10-193)||(12483222-12483405)
chr6 (242-270)||(12483454-12483482)
[»] scaffold0536 (1 HSPs)
scaffold0536 (78-193)||(6337-6452)
[»] chr8 (1 HSPs)
chr8 (116-193)||(12641345-12641422)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 28385753 - 28385569
Alignment:
Q  9 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 108  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28385753 agcagagaagggaaacaagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacatatgttttggaagc 28385654  T
Q  109 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 193  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  28385653 ataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttcctg 28385569  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 12541104 - 12540920
Alignment:
Q  9 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 108  Q
    ||||| || |||||| ||| ||| || |||||||||||||| ||| | ||||||||| ||||||| |||||||||||| |||||| ||||||||||||||    
T  12541104 agcagggaggggaaatgagggtgctgcgagcgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagc 12541005  T
Q  109 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 193  Q
    ||||| ||||||| ||| |||||||||||||||||||| || ||| |||||| |   ||||||||||||||||||||||||||||    
T  12541004 ataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccattcatatgggttgttcctg 12540920  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 28385524 - 28385458
Alignment:
Q  238 tggctgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccc 304  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385524 tggctgccaaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccc 28385458  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 12540871 - 12540809
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccc 304  Q
    |||||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||    
T  12540871 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccc 12540809  T

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Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 3417296 - 3417468
Alignment:
Q  18 gggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcataaaccat 117  Q
    |||||||||| ||| || ||| ||||| |||||||||   |||||||| ||||| | ||||||||||||  ||||| |||||||||||||| ||||| ||    
T  3417296 gggaaacgagggtgctgagagtgagcatgagtgcctgcgttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaactat 3417395  T
Q  118 ttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttc 190  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  3417396 ttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttc 3417468  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 3417520 - 3417582
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  | |||||||||||||    
T  3417520 tgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccc 3417582  T

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Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 13440619 - 13440435
Alignment:
Q  9 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 108  Q
    |||||||| |||||| ||| ||||||||| |  |||||| ||| |||  |||||| | ||| ||  ||||||||| ||  ||||| ||||||||||||||    
T  13440619 agcagagaggggaaaggagggtgatgtgaacatgcacgaatgcatgagttggctcgactcagagaaagttaactcggtgttgtacatatgttttggaagc 13440520  T
Q  109 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 193  Q
    || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  13440519 atcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcctg 13440435  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 13448780 - 13448598
Alignment:
Q  11 cagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcat 110  Q
    |||||| |||||| ||| ||| |||||  | ||||||| ||||||  |||||| | ||| || |||||||||||||  ||||| ||||||||||||||||    
T  13448780 cagagaggggaaatgagggtgctgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcat 13448681  T
Q  111 aaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 193  Q
     ||| |||| ||||||||||||||||| ||||| || || || ||||||||||| ||||||||||||||||||||||||||||    
T  13448680 caactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctg 13448598  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 43 - 191
Target Start/End: Complemental strand, 13455219 - 13455071
Alignment:
Q  43 cacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgaga 142  Q
    ||||||||||||| ||||||  | ||| || |||||||||||||  ||||| |||||||||||||||| ||  |||  ||| ||||||||||||||||||    
T  13455219 cacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagcatcaattattcatctaataaacaactatatgaga 13455120  T
Q  143 ttgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcc 191  Q
    | || ||| || |||||||| ||||||| || |||||||||||||||||    
T  13455119 tggcatgctcactagaagcagcaggtcaaccgttcatatgggttgttcc 13455071  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 13448547 - 13448487
Alignment:
Q  244 ccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccc 304  Q
    |||||||||||||| |||||||| || || ||||||||||| || || |||||||||||||    
T  13448547 ccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccc 13448487  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 48958497 - 48958382
Alignment:
Q  78 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 177  Q
    |||||||||  ||||| |||| ||||||||||||    |||| |||||||||||||| |||||||||||||| |  ||||||||||||||||||  |||     
T  48958497 taactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaattt 48958398  T
Q  178 atatgggttgttcctg 193  Q
     |||||||||||||||    
T  48958397 gtatgggttgttcctg 48958382  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 48912171 - 48912286
Alignment:
Q  78 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 177  Q
    |||||| || |||||| |||| |||||||||  |   ||||| || ||||||||||| ||||||||||||||||  || ||||||||  |||||  ||||    
T  48912171 taactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 48912270  T
Q  178 atatgggttgttcctg 193  Q
    ||||||||||||||||    
T  48912271 atatgggttgttcctg 48912286  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 48974423 - 48974349
Alignment:
Q  114 ccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgt 188  Q
    ||||||| || |||| ||| | |||||||||||  |||||||||||||||| ||||||| |||||||||||||||    
T  48974423 ccatttcactaataagcaattgtatgagattgcaagcgcaatagaagcatcgggtcaccaattcatatgggttgt 48974349  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 48965510 - 48965455
Alignment:
Q  247 aagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggc 302  Q
    |||||||| || |||||||||||||||||||||||||| || || |||||||||||    
T  48965510 aagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggc 48965455  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 48965633 - 48965587
Alignment:
Q  124 gataaacaactatatgagattgcgtgcgcaatagaagcatcaggtca 170  Q
    |||||||| || |||||||||||||| |||||||||||||| |||||    
T  48965633 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtca 48965587  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 12589926 - 12590108
Alignment:
Q  9 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 108  Q
    |||||| | |||||| ||||||| ||||| || ||| ||||| ||||  ||||| || ||  |||||| |||||| ||  ||||| |||| ||||| |||    
T  12589926 agcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagc 12590025  T
Q  109 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcc 191  Q
    |||  | ||||||| ||||||||||| ||||||||| |||| |  |||||||||||||| |||  |||| |||||||| ||||    
T  12590026 atatgctatttctcagataaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcc 12590108  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 12483222 - 12483405
Alignment:
Q  10 gcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagca 109  Q
    ||||||| |||||||||||||| |||||||| ||| ||||| |  |  ||||| || ||| ||| ||  || |||||  ||||| |||| ||||| |||     
T  12483222 gcagagaggggaaacgagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcc 12483321  T
Q  110 taaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 193  Q
    ||  | |||||||||||||||| || || || ||| | |||| |||||||||||| ||| |   ||||||||||||||||||||    
T  12483322 tatgcaatttctctgataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcctg 12483405  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 12483454 - 12483482
Alignment:
Q  242 tgccgaagggatttgaggagagaaacatt 270  Q
    |||||||||||||||||||||||||||||    
T  12483454 tgccgaagggatttgaggagagaaacatt 12483482  T

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Target: scaffold0536 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 6337 - 6452
Alignment:
Q  78 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 177  Q
    |||||||||  ||||| |||| ||||||||| ||  || |||| | ||||||||||| || |||||||| || |  ||||||||||| ||||||  ||||    
T  6337 taactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattc 6436  T
Q  178 atatgggttgttcctg 193  Q
    ||||||||||||||||    
T  6437 atatgggttgttcctg 6452  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 12641345 - 12641422
Alignment:
Q  116 atttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 193  Q
    ||||||||||||||||||| || ||||||||| ||| |||||||   |||||||||  |||  |||||||||||||||    
T  12641345 atttctctgataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcctg 12641422  T

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