View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2194_low_15 (Length: 283)

Name: NF2194_low_15
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2194_low_15
NF2194_low_15
[»] chr5 (1 HSPs)
chr5 (13-268)||(9605597-9605852)
[»] chr8 (12 HSPs)
chr8 (13-253)||(6450311-6450551)
chr8 (13-250)||(6456576-6456813)
chr8 (13-61)||(6351942-6351990)
chr8 (16-61)||(6369723-6369768)
chr8 (13-61)||(6390672-6390720)
chr8 (13-61)||(6409877-6409925)
chr8 (13-61)||(7458765-7458813)
chr8 (18-61)||(6262887-6262930)
chr8 (13-56)||(6331588-6331631)
chr8 (13-62)||(6274203-6274252)
chr8 (13-62)||(6288453-6288502)
chr8 (13-61)||(7471167-7471215)
[»] chr2 (1 HSPs)
chr2 (195-252)||(42689216-42689273)
[»] chr3 (1 HSPs)
chr3 (172-247)||(36745548-36745623)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 9605597 - 9605852
Alignment:
Q  13 tcatcatagcaacaaacagacatcttagtgtgcttcaccctattaataagttgctagatccccatttccgcgacacaataaatatcaacggacttgcgcg 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  9605597 tcatcatagcaacaaacagacatcttagtgttcttcaccctattaataagttgctagatccccatttccgtgacacaataaatatcaacggacttgctcg 9605696  T
Q  113 aaatgctctaattaatgctgatggaatcatcgaggaaacatttttacctgggccgaattctgttgagatgtcatcagcagcatacaagaattgggttttc 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9605697 aaatgctctaattaatgctgatggaataatcgaggaaacatttttacctgggccgaattctgttgagatgtcatcagcagcatacaagaattgggttttc 9605796  T
Q  213 actgatcaagcattaccggctgatcttatcaagaggtaattcgccaccatctaaat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9605797 actgatcaagcattaccggctgatcttatcaagaggtaattcgccaccatctaaat 9605852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 6450551 - 6450311
Alignment:
Q  13 tcatcatagcaacaaacagacatcttagtgtgcttcaccctattaataagttgctagatccccatttccgcgacacaataaatatcaacggacttgcgcg 112  Q
    |||||||||||||||| |||||||| ||||| |||||||| ||||||||| |  ||   ||||||| ||| ||||||||||||||||| |||||||| ||    
T  6450551 tcatcatagcaacaaatagacatctaagtgtacttcacccgattaataagcttttattcccccattaccgtgacacaataaatatcaatggacttgctcg 6450452  T
Q  113 aaatgctctaattaatgctgatggaatcatcgaggaaacatttttacctgggccgaattctgttgagatgtcatcagcagcatacaagaattgggttttc 212  Q
    | | |||||||| |||||||  || || || ||| |||||||||  || || || |||||  ||||||| || || ||||  ||||||||||||||||||    
T  6450451 acaagctctaatcaatgctggcggcattatagagcaaacattttgtccaggaccaaattccattgagatttcttctgcagtttacaagaattgggttttc 6450352  T
Q  213 actgatcaagcattaccggctgatcttatcaagaggtaatt 253  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  6450351 actgatcaagcattaccagctgatcttatcaagaggtaatt 6450311  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 6456813 - 6456576
Alignment:
Q  13 tcatcatagcaacaaacagacatcttagtgtgcttcaccctattaataagttgctagatccccatttccgcgacacaataaatatcaacggacttgcgcg 112  Q
    |||||||||||||||| || ||||| ||||| |||||||| ||||||||  |  ||  ||| |||||||| ||||||||||||||||| |||||||| ||    
T  6456813 tcatcatagcaacaaataggcatctaagtgttcttcacccaattaataaacttttatttcctcatttccgtgacacaataaatatcaatggacttgctcg 6456714  T
Q  113 aaatgctctaattaatgctgatggaatcatcgaggaaacatttttacctgggccgaattctgttgagatgtcatcagcagcatacaagaattgggttttc 212  Q
    | |  ||||||| ||||||| ||| || || ||| |||||||||| || || || ||||| || ||||| || |||  ||  |||| | |||||||||||    
T  6456713 acaatctctaatcaatgctggtggcattatagagcaaacatttttgccaggaccaaattcagtcgagatttcttcaatagtttacagggattgggttttc 6456614  T
Q  213 actgatcaagcattaccggctgatcttatcaagaggta 250  Q
    || || ||||||||||||||||||||||||||||||||    
T  6456613 accgaccaagcattaccggctgatcttatcaagaggta 6456576  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 6351990 - 6351942
Alignment:
Q  13 tcatcatagcaacaaacagacatcttagtgtgcttcaccctattaataa 61  Q
    ||||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  6351990 tcatcatagcaacaaacaggcatcttagtgtggttcaccctattcataa 6351942  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 6369768 - 6369723
Alignment:
Q  16 tcatagcaacaaacagacatcttagtgtgcttcaccctattaataa 61  Q
    ||||||||||||| || |||||||||||||||||||||||| ||||    
T  6369768 tcatagcaacaaataggcatcttagtgtgcttcaccctattcataa 6369723  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 6390720 - 6390672
Alignment:
Q  13 tcatcatagcaacaaacagacatcttagtgtgcttcaccctattaataa 61  Q
    |||||||||||||||| || |||||||||||| ||||||||||| ||||    
T  6390720 tcatcatagcaacaaataggcatcttagtgtggttcaccctattcataa 6390672  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 6409925 - 6409877
Alignment:
Q  13 tcatcatagcaacaaacagacatcttagtgtgcttcaccctattaataa 61  Q
    |||||||||||||||| || |||||||||||| ||||||||||| ||||    
T  6409925 tcatcatagcaacaaataggcatcttagtgtggttcaccctattcataa 6409877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 7458813 - 7458765
Alignment:
Q  13 tcatcatagcaacaaacagacatcttagtgtgcttcaccctattaataa 61  Q
    |||||||||||||||| || |||||||||||| ||||||||||| ||||    
T  7458813 tcatcatagcaacaaataggcatcttagtgtggttcaccctattcataa 7458765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 6262930 - 6262887
Alignment:
Q  18 atagcaacaaacagacatcttagtgtgcttcaccctattaataa 61  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||    
T  6262930 atagcaacaaacagacaacttagtgtgcttcatcctatttataa 6262887  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 6331631 - 6331588
Alignment:
Q  13 tcatcatagcaacaaacagacatcttagtgtgcttcaccctatt 56  Q
    |||||||||||||||| || |||||||||||| |||||||||||    
T  6331631 tcatcatagcaacaaataggcatcttagtgtggttcaccctatt 6331588  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 6274252 - 6274203
Alignment:
Q  13 tcatcatagcaacaaacagacatcttagtgtgcttcaccctattaataag 62  Q
    |||||||||||||||| || |||||||||||| |||| |||||| |||||    
T  6274252 tcatcatagcaacaaataggcatcttagtgtggttcatcctattcataag 6274203  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 6288502 - 6288453
Alignment:
Q  13 tcatcatagcaacaaacagacatcttagtgtgcttcaccctattaataag 62  Q
    |||||||||||||||| || |||||||||||| |||| |||||| |||||    
T  6288502 tcatcatagcaacaaataggcatcttagtgtggttcatcctattcataag 6288453  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 7471215 - 7471167
Alignment:
Q  13 tcatcatagcaacaaacagacatcttagtgtgcttcaccctattaataa 61  Q
    |||||||||||||||| || |||||||||||| |||||| |||| ||||    
T  7471215 tcatcatagcaacaaataggcatcttagtgtggttcaccatattcataa 7471167  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 42689216 - 42689273
Alignment:
Q  195 tacaagaattgggttttcactgatcaagcattaccggctgatcttatcaagaggtaat 252  Q
    |||||||||||||||||| ||||||||||  | || ||||||||||||||||||||||    
T  42689216 tacaagaattgggttttccctgatcaagcccttccagctgatcttatcaagaggtaat 42689273  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 36745548 - 36745623
Alignment:
Q  172 ctgttgagatgtcatcagcagcatacaagaattgggttttcactgatcaagcattaccggctgatcttatcaagag 247  Q
    ||||||||||||| || ||||  |||||| ||||||||||  |||| |||||| |||| |||||||||||||||||    
T  36745548 ctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagag 36745623  T

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