View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2194_low_16 (Length: 277)
Name: NF2194_low_16
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2194_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 51729128 - 51728873
Alignment:
| Q |
11 |
atgccagaaaatttcttctcagaggtggaaaaaggcaaaattctacttaaaaaagcatcaaagtggtggttttgtaatgaaggaatcaaatttgaagata |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51729128 |
atgccagaaaatttcttctcagaggtggaaaaaggcaaaattctacttaaaaaagcatcaaagtggtggttttgtaatgaaggaatcgaatttgaagata |
51729029 |
T |
|
| Q |
111 |
acactgaggtggaagccgatgtagtgatccttgcaactggttttgatggaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttgga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51729028 |
acactgaggtggaagccgatgtagtgatccttgcaactggttttaatggaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttgga |
51728929 |
T |
|
| Q |
211 |
gtacccctctggccttatacctttgtacaggtaagaagtacttgtttgtgattcat |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51728928 |
gtacccctctggccttatacctttgtacaggtaagaagtacttgtttgtgattcat |
51728873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 19056734 - 19056891
Alignment:
| Q |
59 |
aaaaaagcatcaaagtggtggttttgtaatgaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatg |
158 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||| |||||| ||||||| || |||||| | | || || ||||| || | ||||||||||||| ||||| |
|
|
| T |
19056734 |
aaaagagcatcaaagtggtgtttttggaatggaggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatg |
19056833 |
T |
|
| Q |
159 |
gaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttggagtaccc |
216 |
Q |
| |
|
| || || ||| ||||||||||||| ||||||||||||| |||| ||||||| ||||| |
|
|
| T |
19056834 |
ggaaaaagaagctcaaaaccattttgccagagcctttttctagcttgttggaataccc |
19056891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 19188465 - 19188308
Alignment:
| Q |
59 |
aaaaaagcatcaaagtggtggttttgtaatgaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatg |
158 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||| |||||| ||||||| || |||||| | | || || ||||| || | ||||||||||||| ||||| |
|
|
| T |
19188465 |
aaaagagcatcaaagtggtgtttttggaatggaggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatg |
19188366 |
T |
|
| Q |
159 |
gaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttggagtaccc |
216 |
Q |
| |
|
| || || ||| ||||||||||||| ||||||||||||| |||| ||||||| ||||| |
|
|
| T |
19188365 |
ggaaaaagaagctcaaaaccattttgccagagcctttttctagcttgttggaataccc |
19188308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University