View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2194_low_21 (Length: 245)
Name: NF2194_low_21
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2194_low_21 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 5774881 - 5775125
Alignment:
| Q |
1 |
tgatgacaaggtcttctctcttcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgaggtaattcctatc |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774881 |
tgatgacaaggtcttctctattcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgaggtaattcctatc |
5774980 |
T |
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| Q |
101 |
cctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacacatgaaaaacttccaaatgaaatttggaggcgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774981 |
cctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacacatgaaaaacttccaaatgaaatttggaggcgatt |
5775080 |
T |
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| Q |
201 |
tcagagaagtcccgtgccgctttagtaaggctggtctggcaaacg |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5775081 |
tcagagaagtcccgtgccgctttagtaaggctggtctggcaaacg |
5775125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 5768601 - 5768766
Alignment:
| Q |
1 |
tgatgacaaggtcttctctcttcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgaggtaattcctatc |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768601 |
tgatgacaaggtcttctctattcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgaggtaattcctatc |
5768700 |
T |
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| Q |
101 |
cctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacac |
166 |
Q |
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| T |
5768701 |
tctaagcatctccatcaccgtcttccggatcctatacagcttagatatttcatcctccgaaaacac |
5768766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 5775256 - 5775421
Alignment:
| Q |
1 |
tgatgacaaggtcttctctcttcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgaggtaattcctatc |
100 |
Q |
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|||||||||||||||||||||||| || ||| |||||| ||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||| || |
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| T |
5775256 |
tgatgacaaggtcttctctcttcaagttctcaccatatgtctccttgaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattcctgtc |
5775355 |
T |
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| Q |
101 |
cctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacac |
166 |
Q |
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| T |
5775356 |
gcgaagcatctccatcaccttcttccggatcctatacagctttgatatttcatcctccgaaaacac |
5775421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 5768399 - 5768470
Alignment:
| Q |
168 |
tgaaaaacttccaaatgaaatttggaggcgatttcagagaagtcccgtgccgctttagtaaggctggtctggcaaacg |
245 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
5768399 |
tgaaaaacttccaaatgaaatttggagtcgatttcagaga------gtgccatgttagtaaggctggtctggcaaacg |
5768470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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