View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2194_low_24 (Length: 233)

Name: NF2194_low_24
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2194_low_24
NF2194_low_24
[»] chr4 (15 HSPs)
chr4 (1-214)||(5564982-5565195)
chr4 (1-214)||(5858246-5858459)
chr4 (58-214)||(5605299-5605455)
chr4 (43-214)||(3749134-3749305)
chr4 (4-210)||(5570938-5571144)
chr4 (58-123)||(5895061-5895126)
chr4 (42-128)||(5886200-5886286)
chr4 (134-214)||(252282-252362)
chr4 (1-212)||(5852818-5853029)
chr4 (46-99)||(5847985-5848038)
chr4 (107-203)||(5583248-5583344)
chr4 (149-214)||(5539220-5539285)
chr4 (4-65)||(5559340-5559401)
chr4 (149-212)||(5553395-5553456)
chr4 (20-56)||(5583161-5583197)
[»] chr8 (1 HSPs)
chr8 (44-210)||(1483241-1483407)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 5565195 - 5564982
Alignment:
Q  1 cagattgaaacattgtctgttattgacttatcatttaactacaatctccatggttcatttccagactactcactaagtgaatctcttcatagcattatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5565195 cagattgaaacattgtctgttattgacttatcatttaactacaatctccatggttcattcccagactactcactaagtgaatctcttcatagcattatag 5565096  T
Q  101 tgagttacacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5565095 tgagttacacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacact 5564996  T
Q  201 tccaaattcattgt 214  Q
    ||||||||||||||    
T  5564995 tccaaattcattgt 5564982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 5858459 - 5858246
Alignment:
Q  1 cagattgaaacattgtctgttattgacttatcatttaactacaatctccatggttcatttccagactactcactaagtgaatctcttcatagcattatag 100  Q
    ||||||| |||||||||||| ||||||||||  |  ||| | ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| ||    
T  5858459 cagattggaacattgtctgtgattgacttattttccaacgaaaatctccgtggttcatttccaaactactcactaagtgaatctcttcatagaattagag 5858360  T
Q  101 tgagttacacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacact 200  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |||||| |||||||||||||   |||||||||||||||||| ||    
T  5858359 tgagtgacacaaacttctctggaccattacctagctctattggcaacttgaggcagttatctgaattggatctttctttttgtcaatttaatggaaccct 5858260  T
Q  201 tccaaattcattgt 214  Q
    ||||||||||||||    
T  5858259 tccaaattcattgt 5858246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 5605455 - 5605299
Alignment:
Q  58 tttccagactactcactaagtgaatctcttcatagcattatagtgagttacacaaacttctctggagcattacctagctctattggcaaattgaggcact 157  Q
    ||||||||||||||||| |||||||||||||| |||||||| | |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  5605455 tttccagactactcacttagtgaatctcttcacagcattatggcgagtaacacaagcttctctggagcattacctagctctattggcaacttgaggcact 5605356  T
Q  158 tatctaaattggatctttccagttgtcaatttaatggaacacttccaaattcattgt 214  Q
    ||||| ||||| |||||||||||||||||||||||||||||||| | ||||||||||    
T  5605355 tatctgaattgtatctttccagttgtcaatttaatggaacactttccaattcattgt 5605299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 3749305 - 3749134
Alignment:
Q  43 aatctccatggttcatttccagactactcactaagtgaatctcttcatagcattatagtgagttacacaaacttctctggagcattacctagctctattg 142  Q
    ||||||||||| |  |||||| |||||||| | |||||||||||||| |  |||| ||| ||| |||||||||||| |||||||||||||| |  |||||    
T  3749305 aatctccatggcttttttccacactactcaatgagtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattg 3749206  T
Q  143 gcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttccaaattcattgt 214  Q
    | ||  ||||  | |||||||  |||||||||||   ||||||||| |||||||||||||||||||||||||    
T  3749205 gaaacctgagaaaattatctactttggatctttctttttgtcaattcaatggaacacttccaaattcattgt 3749134  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 5570938 - 5571144
Alignment:
Q  4 attgaaacattgtctgttattgacttatcatttaactacaatctccatggttcatttccagactactcactaagtgaatctcttcatagcattatagtga 103  Q
    |||| |||||||||  ||||||| |||||||| |||||||||||||||||||||||||| || |   | || |||| |||||| |||| | | |  || |    
T  5570938 attggaacattgtcatttattgatttatcattcaactacaatctccatggttcatttccggaatttccgctgagtggatctctccataccttaagggtaa 5571037  T
Q  104 gttacacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttcc 203  Q
    || |||||| ||| ||||||||||| ||    |||||||| ||  ||||||| |||||| ||||||||||||  | |||| |||||||||||||||||||    
T  5571038 gtaacacaagcttttctggagcatttccatattctattggtaacatgaggcatttatctgaattggatcttttaaattgtaaatttaatggaacacttcc 5571137  T
Q  204 aaattca 210  Q
     ||||||    
T  5571138 caattca 5571144  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 5895061 - 5895126
Alignment:
Q  58 tttccagactactcactaagtgaatctcttcatagcattatagtgagttacacaaacttctctgga 123  Q
    ||||||||||||||||| |||||||||||||||||||||||| || || |||||| ||||||||||    
T  5895061 tttccagactactcacttagtgaatctcttcatagcattatattgcgtaacacaagcttctctgga 5895126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 5886200 - 5886286
Alignment:
Q  42 caatctccatggttcatttccagactactcactaagtgaatctcttcatagcattatagtgagttacacaaacttctctggagcatt 128  Q
    ||||||||||| ||  || || || |||||||| ||||||| |||||||||||||| ||||||| |||||| |||||||||||||||    
T  5886200 caatctccatgtttttttccctgattactcacttagtgaatatcttcatagcattagagtgagtaacacaagcttctctggagcatt 5886286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 252282 - 252362
Alignment:
Q  134 gctctattggcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttccaaattcattgt 214  Q
    ||||||||||||| ||||||||||||||| |||| || |||||    |||||||||||||| |||||||| ||||||||||    
T  252282 gctctattggcaacttgaggcacttatctgaattagacctttctcactgtcaatttaatggtacacttcccaattcattgt 252362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 5852818 - 5853029
Alignment:
Q  1 cagattgaaacattgtctgttattgacttatcatttaactacaatctccatggttcatttccagactactca-ctaagtgaatctcttcatagcattata 99  Q
    ||||||| |||| |||||||||||||| || |||  |||  ||||||||||||||||||||||||  | ||| || |||| |||||| || | | | |      
T  5852818 cagattggaacactgtctgttattgacataacatacaacagcaatctccatggttcatttccagaa-attcagctgagtggatctctccagaccttaagg 5852916  T
Q  100 gtgagttacacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacac 199  Q
    || |||| ||||||||| ||||||||| | ||   |   ||||| ||  |||||||||||| | ||||||||||||| | || |||||||||||||||||    
T  5852917 gtaagtttcacaaacttttctggagcaattccacacatcattggtaagatgaggcacttatatgaattggatctttctaattctcaatttaatggaacac 5853016  T
Q  200 ttccaaattcatt 212  Q
    |||| ||||||||    
T  5853017 ttcccaattcatt 5853029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 5847985 - 5848038
Alignment:
Q  46 ctccatggttcatttccagactactcactaagtgaatctcttcatagcattata 99  Q
    ||||||||||  ||||||||| ||||||| ||||||||||||||||||||||||    
T  5847985 ctccatggtttttttccagaccactcacttagtgaatctcttcatagcattata 5848038  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 5583248 - 5583344
Alignment:
Q  107 acacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttcc 203  Q
    |||||| ||||||||||||||| ||   ||||||||| ||  || |||| |||||| ||||||||||||| | |||| || ||||||||||||||||    
T  5583248 acacaagcttctctggagcatttccatactctattggtaacatggggcatttatctgaattggatctttcgaattgtgaacttaatggaacacttcc 5583344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 5539220 - 5539285
Alignment:
Q  149 tgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttccaaattcattgt 214  Q
    |||||||||||||| ||||||||||||| | | |  | |||||||||| |||||| ||||||||||    
T  5539220 tgaggcacttatctgaattggatctttctaatagcaattttaatggaatacttcccaattcattgt 5539285  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 5559401 - 5559340
Alignment:
Q  4 attgaaacattgtctgttattgacttatcatttaactacaatctccatggttcatttccaga 65  Q
    |||| |||||||||  ||||||||||| |||| ||| | ||||||||| |||||||||||||    
T  5559401 attggaacattgtcatttattgacttaacattaaacaaaaatctccatagttcatttccaga 5559340  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 5553456 - 5553395
Alignment:
Q  149 tgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttccaaattcatt 212  Q
    |||||||||||| ||  ||||||||||| | || ||||| ||||||||||||||| ||||||||    
T  5553456 tgaggcacttatata--ttggatctttctaattctcaatataatggaacacttcccaattcatt 5553395  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 5583161 - 5583197
Alignment:
Q  20 ttattgacttatcatttaactacaatctccatggttc 56  Q
    ||||||||||||| || ||||||||||||||||||||    
T  5583161 ttattgacttatccttcaactacaatctccatggttc 5583197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 1483407 - 1483241
Alignment:
Q  44 atctccatggttcatttccagactactcactaagtgaatctcttcatagcattatagtgagttacacaaacttctctggagcattacctagctctattgg 143  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||| ||| |||| ||| ||||||||||  || || |||| |||||| | |||||||||    
T  1483407 atcttcatggttcatttccaaactactcacttagtgaatctcttcgtagaattagagttagttacacaagtttatcaggagaattaccaaactctattgg 1483308  T
Q  144 caaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttccaaattca 210  Q
    |||||||||| |||||||| ||||||||||| |    ||||||||||||||||||||||| ||||||    
T  1483307 caaattgaggtacttatctgaattggatcttccttactgtcaatttaatggaacacttcccaattca 1483241  T

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