View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2194_low_26 (Length: 229)
Name: NF2194_low_26
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2194_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 7076122 - 7076027
Alignment:
| Q |
118 |
taaataaataagggtcaaatatacaatttacatatcaaatctgctatagtagttgctaaattaaaattacaattacatcaagtctgccatagtata |
213 |
Q |
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| T |
7076122 |
taaataaataagggtcaaatatacaatttatatatcaaatctgccatagtagttgctaaattaaaattagaattacatcaagtctgccatagtata |
7076027 |
T |
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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 43459452 - 43459356
Alignment:
| Q |
117 |
ataaataaataagggtcaaatatacaatttacatatcaaatctgctatagtagttgctaaattaaaattacaattacatcaagtctgccatagtata |
213 |
Q |
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| T |
43459452 |
ataaataaataagggtcaaatatacaatttatatatcaaatctgccatagtagttgctaaattaaaattagaattacatcaagtttgccatagtata |
43459356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 44529958 - 44530028
Alignment:
| Q |
142 |
aatttacatatcaaatctgctatagtagttgctaaattaaaattacaattacatcaagtctgccatagtat |
212 |
Q |
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| T |
44529958 |
aatttatatatcaaatctgccatagtagttgctaaattaaaattagaattacatcaagtctgctatagtat |
44530028 |
T |
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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 53762215 - 53762145
Alignment:
| Q |
142 |
aatttacatatcaaatctgctatagtagttgctaaattaaaattacaattacatcaagtctgccatagtat |
212 |
Q |
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| T |
53762215 |
aatttatatatcaaatcttccatagtagttgctaaattaaaattagaatgacatctagtctgccatagtat |
53762145 |
T |
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