View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2194_low_3 (Length: 618)

Name: NF2194_low_3
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2194_low_3
NF2194_low_3
[»] chr7 (5 HSPs)
chr7 (1-599)||(45685145-45685747)
chr7 (390-472)||(31169225-31169306)
chr7 (508-577)||(5817181-5817250)
chr7 (508-577)||(23402924-23402993)
chr7 (507-576)||(23580825-23580893)
[»] chr4 (4 HSPs)
chr4 (508-577)||(34670576-34670645)
chr4 (510-577)||(18912276-18912343)
chr4 (290-416)||(42234067-42234192)
chr4 (508-552)||(5112379-5112423)
[»] chr5 (4 HSPs)
chr5 (332-460)||(25784925-25785052)
chr5 (511-577)||(33030854-33030920)
chr5 (505-577)||(3651617-3651689)
chr5 (508-564)||(28832387-28832443)
[»] chr2 (4 HSPs)
chr2 (510-579)||(35397626-35397694)
chr2 (505-557)||(44732088-44732140)
chr2 (508-577)||(28770685-28770754)
chr2 (508-564)||(2869603-2869659)
[»] chr1 (6 HSPs)
chr1 (507-577)||(918389-918460)
chr1 (369-419)||(6068290-6068340)
chr1 (510-577)||(35109450-35109517)
chr1 (509-579)||(32736908-32736978)
chr1 (508-577)||(17345430-17345499)
chr1 (508-564)||(32889570-32889626)
[»] chr8 (6 HSPs)
chr8 (508-577)||(9054748-9054817)
chr8 (507-563)||(6366636-6366692)
chr8 (290-362)||(11772235-11772307)
chr8 (511-577)||(3051237-3051303)
chr8 (384-482)||(37043786-37043883)
chr8 (508-564)||(19752304-19752360)
[»] chr6 (2 HSPs)
chr6 (508-576)||(31936695-31936763)
chr6 (508-573)||(1115015-1115080)
[»] chr3 (2 HSPs)
chr3 (407-477)||(37387632-37387701)
chr3 (508-577)||(1417391-1417460)


Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Original strand, 45685145 - 45685747
Alignment:
Q  1 gagattctaataggcattacgcattagtaatctacacttcacgttgaatgcatgtttggtgtataacactaacgt-------atacatgtagtcatagct 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  45685145 gagattctaataggcattacgcattagtaatctacacttcacgttgaatgcatgtttggtgtataacactaacgtgaaatcgatacatgtagtcatagct 45685244  T
Q  94 ttgtcgatatttacgtataaatatcttgttcttttgtgttgaacttggttcaaaatttggtgatgaagttattgaagaatcgataaaaaggaatcgtgtc 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45685245 ttgtcgatatttacgtataaatatcttgttcttttgtgttgaacttggttcaaaatttggtgatgaagttattgaagaatcgataaaaaggaatcgtgtc 45685344  T
Q  194 tcgattagatggaatcgtagcgcgaatggggatcaggatttccaacgatattgtgtttgagtttctgattggcgccaggaaaatcgttgcacgatttttt 293  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  45685345 tcgattagatggaatcgtagtgcgaatggggattaggatttccaacgatattgtgtttgagtttctgattggcgccaggaaaatcgttgcacga--tttt 45685442  T
Q  294 gcctgggtctgggtactataaaagctttcaatcttcaattttttagtagttttaagagagagaatcttgacaaatcaaatgagaaaactttgagggaact 393  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  45685443 gcctgggtctgagtactataaaagctttcgatcttcaattttttagtagttttaagagagagaatcttgacagatcaaatgagaaaacttttagggaact 45685542  T
Q  394 taaaggctaaaagttgagtgtctttgaggtgagattcttggattgtgaaacaattcacaaacacctttgatagtcagatctcatcagagaaaggatnnnn 493  Q
    |||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||        
T  45685543 taaaggttaaaagttgagtgtctttggggtgagattcttgggttgtgaaacaattcacaaacacctttgatagtcagatctcatcaaagaaaggataaaa 45685642  T
Q  494 nnnncttcatttcttgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttctttatcagcttgagaccta 593  Q
         ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  45685643 aaactttc-tttcttgttttctcttaggattcattgcgactttgagtgacttaaaaaatggatagaaattaaggtttgttctttgtcagcttgagatcta 45685741  T
Q  594 agttct 599  Q
    ||||||    
T  45685742 agttct 45685747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 390 - 472
Target Start/End: Original strand, 31169225 - 31169306
Alignment:
Q  390 aacttaaaggctaaaagttgagtgtctttgaggtgagattcttggattgtgaaacaattcacaaacacctttgatagtcagat 472  Q
    ||||||||||||||  ||| |||||||||| | |||||||||||| ||| |||||| |||||||||||||| |||||| ||||    
T  31169225 aacttaaaggctaagggttaagtgtctttgtg-tgagattcttgggttgggaaacacttcacaaacaccttggatagtgagat 31169306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 508 - 577
Target Start/End: Original strand, 5817181 - 5817250
Alignment:
Q  508 tgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttcttt 577  Q
    |||||| ||||||||||||||| || | ||||||| || |||||||||||||||||| | ||||||||||    
T  5817181 tgttttttcttaggattcattgagagtgtgagtgacttgaaaaatggatagaaattaggttttgttcttt 5817250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 508 - 577
Target Start/End: Original strand, 23402924 - 23402993
Alignment:
Q  508 tgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttcttt 577  Q
    |||||||||||||||||||||| || | |||||||| | |||||||| ||||||||| |  |||||||||    
T  23402924 tgttttctcttaggattcattgagagtgtgagtgatgtgaaaaatgggtagaaattaggacttgttcttt 23402993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 576
Target Start/End: Original strand, 23580825 - 23580893
Alignment:
Q  507 ttgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttctt 576  Q
    ||||||||||||| ||| ||||| |  ||||||||| || |||| |||||||||||||||||||||||||    
T  23580825 ttgttttctcttatgatccattgtgggtttgagtgacttgaaaa-tggatagaaattaaggtttgttctt 23580893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 508 - 577
Target Start/End: Original strand, 34670576 - 34670645
Alignment:
Q  508 tgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttcttt 577  Q
    |||||||||||||||||||||| || | ||||||| || |||||||||||||||||| | ||||||||||    
T  34670576 tgttttctcttaggattcattgtgagtgtgagtgacttgaaaaatggatagaaattatgatttgttcttt 34670645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 510 - 577
Target Start/End: Original strand, 18912276 - 18912343
Alignment:
Q  510 ttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttcttt 577  Q
    |||||||||||||||||||| |  ||||||||| || ||||||||||| || ||| ||||||||||||    
T  18912276 ttttctcttaggattcattgtgggtttgagtgacttgaaaaatggatataatttagggtttgttcttt 18912343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 416
Target Start/End: Original strand, 42234067 - 42234192
Alignment:
Q  290 ttttgcctgggtctgggtactataaaagctttcaatcttcaattttttagtagttttaagagagagaatcttgacaaatcaaatgagaaaactttgaggg 389  Q
    |||||| ||||||| ||||||||| | || |||| ||  || |||||  || | || |||||| ||||||||| |||| |||| ||||||||||| ||||    
T  42234067 ttttgcgtgggtctaggtactatatatgccttcattcaacattttttgggttgcttcaagagatagaatcttgtcaaaccaaa-gagaaaacttttaggg 42234165  T
Q  390 aacttaaaggctaaaagttgagtgtct 416  Q
    |||||| |||  || ||||||||||||    
T  42234166 aacttagaggtgaagagttgagtgtct 42234192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 552
Target Start/End: Complemental strand, 5112423 - 5112379
Alignment:
Q  508 tgttttctcttaggattcattgcgactttgagtgatttaaaaaat 552  Q
    |||||||||||||||||||||| || | ||||||| |||||||||    
T  5112423 tgttttctcttaggattcattgtgagtgtgagtgacttaaaaaat 5112379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 332 - 460
Target Start/End: Complemental strand, 25785052 - 25784925
Alignment:
Q  332 ttttttagtagttttaagagagagaatcttgacaaatcaaatgagaaaactttgagggaacttaaaggctaaaagttgagtgtctttgaggtgagattct 431  Q
    ||||||||| | || |||||| ||||| |||| |||  | |||||| |||||| | |||||||| || ||||||||||||||| ||| ||||||||||||    
T  25785052 ttttttagtggcttcaagagaaagaatattgaaaaactagatgagagaacttttaaggaacttagagtctaaaagttgagtgt-ttttaggtgagattct 25784954  T
Q  432 tggattgtgaaacaattcacaaacacctt 460  Q
    ||| | | |||||| ||| ||||||||||    
T  25784953 tgggtcgggaaacatttctcaaacacctt 25784925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 577
Target Start/End: Original strand, 33030854 - 33030920
Alignment:
Q  511 tttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttcttt 577  Q
    ||||||||||||||||||| || | ||||||| || |||||||| ||||||||| | ||||||||||    
T  33030854 tttctcttaggattcattgagagtgtgagtgacttgaaaaatgggtagaaattatgttttgttcttt 33030920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 577
Target Start/End: Complemental strand, 3651689 - 3651617
Alignment:
Q  505 tcttgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttcttt 577  Q
    ||||||||| ||||||||||||||     ||||||||| || |||||||| ||||||||| ||||||||||||    
T  3651689 tcttgttttatcttaggattcattataggtttgagtgacttgaaaaatgggtagaaattagggtttgttcttt 3651617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 564
Target Start/End: Complemental strand, 28832443 - 28832387
Alignment:
Q  508 tgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaatta 564  Q
    |||||||||||||||||||||| || | || ||||| | |||||||| |||||||||    
T  28832443 tgttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaatta 28832387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 35397694 - 35397626
Alignment:
Q  510 ttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttctttat 579  Q
    |||||||||||||||||||| || | || |||| || ||||||||||||||||| |||||||||||||||    
T  35397694 ttttctcttaggattcattgagattgtgggtgacttgaaaaatggatagaaatt-aggtttgttctttat 35397626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 505 - 557
Target Start/End: Complemental strand, 44732140 - 44732088
Alignment:
Q  505 tcttgttttctcttaggattcattgcgactttgagtgatttaaaaaatggata 557  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||||| ||||    
T  44732140 tcttgttttctcttaggattcattgtgggtttgagtgatttaaaaaatagata 44732088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 508 - 577
Target Start/End: Original strand, 28770685 - 28770754
Alignment:
Q  508 tgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttcttt 577  Q
    ||||||||||||||||||||||||| | ||  ||| || |||||||| |||||||||  |||||||||||    
T  28770685 tgttttctcttaggattcattgcgagtgtgtatgacttgaaaaatgggtagaaattagagtttgttcttt 28770754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 564
Target Start/End: Original strand, 2869603 - 2869659
Alignment:
Q  508 tgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaatta 564  Q
    |||||||||||||||||||||| || | || |||| || |||||||| |||||||||    
T  2869603 tgttttctcttaggattcattgagagtgtgggtgacttgaaaaatgggtagaaatta 2869659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 577
Target Start/End: Original strand, 918389 - 918460
Alignment:
Q  507 ttgttttctcttaggattcattgcgactttgagt-gatttaaaaaatggatagaaattaaggtttgttcttt 577  Q
    ||||||||||||||||||||||| |  ||||||| || || |||||||| ||||||||| ||||||||||||    
T  918389 ttgttttctcttaggattcattgtgggtttgagtggaattgaaaaatgggtagaaattatggtttgttcttt 918460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 419
Target Start/End: Original strand, 6068290 - 6068340
Alignment:
Q  369 caaatgagaaaactttgagggaacttaaaggctaaaagttgagtgtctttg 419  Q
    |||| |||| |||||| |||||||||||||||||||||||||| |||||||    
T  6068290 caaaggagagaacttttagggaacttaaaggctaaaagttgagggtctttg 6068340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 577
Target Start/End: Original strand, 35109450 - 35109517
Alignment:
Q  510 ttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttcttt 577  Q
    ||||||| |||||||||||| || | || |||| || |||| ||| ||||||||||||||||||||||    
T  35109450 ttttctcgtaggattcattgtgagtgtgtgtgacttgaaaattgggtagaaattaaggtttgttcttt 35109517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 579
Target Start/End: Original strand, 32736908 - 32736978
Alignment:
Q  509 gttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttctttat 579  Q
    ||||||||||||||||||||| || | |   ||| || |||||||| ||||||||| ||||||||||||||    
T  32736908 gttttctcttaggattcattgtgagtgtcgatgacttgaaaaatgggtagaaattagggtttgttctttat 32736978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 577
Target Start/End: Original strand, 17345430 - 17345499
Alignment:
Q  508 tgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttcttt 577  Q
    |||||||||||| ||||||||  || | || |||| ||||||||||| ||||||||| | ||||||||||    
T  17345430 tgttttctcttaagattcattaagagtgtgggtgacttaaaaaatgggtagaaattaggttttgttcttt 17345499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 564
Target Start/End: Complemental strand, 32889626 - 32889570
Alignment:
Q  508 tgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaatta 564  Q
    |||||||||||||||||||||| || | || ||||| | |||||||| |||||||||    
T  32889626 tgttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaatta 32889570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 508 - 577
Target Start/End: Original strand, 9054748 - 9054817
Alignment:
Q  508 tgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttcttt 577  Q
    |||||||||||||||||||||| || | ||||||| || |||||||| |||||||||   ||||||||||    
T  9054748 tgttttctcttaggattcattgagagtgtgagtgacttgaaaaatgggtagaaattagattttgttcttt 9054817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 6366692 - 6366636
Alignment:
Q  507 ttgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaatt 563  Q
    |||||||||||||||||||||||  | ||||||||| || |||| ||||||||||||    
T  6366692 ttgttttctcttaggattcattgttagtttgagtgaattgaaaagtggatagaaatt 6366636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 290 - 362
Target Start/End: Complemental strand, 11772307 - 11772235
Alignment:
Q  290 ttttgcctgggtctgggtactataaaagctttcaatcttcaattttttagtagttttaagagagagaatcttg 362  Q
    |||||||||||||||| ||||||| |||  || | |||||| ||||||||| | || ||||||||||||||||    
T  11772307 ttttgcctgggtctggatactatataagactttattcttcatttttttagtcgcttcaagagagagaatcttg 11772235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 577
Target Start/End: Complemental strand, 3051303 - 3051237
Alignment:
Q  511 tttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttcttt 577  Q
    ||||||||||||||||||| || | | |||||  | |||||||| ||||||||||| ||||||||||    
T  3051303 tttctcttaggattcattgagagtgtaagtgacatgaaaaatgggtagaaattaagttttgttcttt 3051237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 482
Target Start/End: Complemental strand, 37043883 - 37043786
Alignment:
Q  384 tgagggaacttaaaggctaaaagttgagtgtctttgaggtgagattcttggattgtgaaacaattcacaaacacctttgatagtcagatctcatcagag 482  Q
    |||||||||||| || ||||  ||||||||||||||| ||||||||||||||  |  ||||| || ||||||||||| ||| || |||| |||| ||||    
T  37043883 tgagggaacttagagtctaagggttgagtgtctttga-gtgagattcttggaccggaaaacacttgacaaacaccttggatggtgagatttcattagag 37043786  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 564
Target Start/End: Original strand, 19752304 - 19752360
Alignment:
Q  508 tgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaatta 564  Q
    |||||||||||||||||||||| || | || ||||| | |||||||| |||||||||    
T  19752304 tgttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaatta 19752360  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 576
Target Start/End: Complemental strand, 31936763 - 31936695
Alignment:
Q  508 tgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttctt 576  Q
    |||||||||||||||||||||| || | || ||||| | |||||||| ||||||||| | |||||||||    
T  31936763 tgttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaattaggatttgttctt 31936695  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 573
Target Start/End: Original strand, 1115015 - 1115080
Alignment:
Q  508 tgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgtt 573  Q
    ||||||||||||  |||||||| || | || |||| || |||||||||||||||||| ||||||||    
T  1115015 tgttttctcttaatattcattgtgagtgtgggtgacttgaaaaatggatagaaattagggtttgtt 1115080  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 407 - 477
Target Start/End: Complemental strand, 37387701 - 37387632
Alignment:
Q  407 ttgagtgtctttgaggtgagattcttggattgtgaaacaattcacaaacacctttgatagtcagatctcat 477  Q
    ||||||||||||| ||||  |||||||| ||| |||||| |||||||||||||| ||| || |||||||||    
T  37387701 ttgagtgtctttg-ggtggaattcttgggttgggaaacacttcacaaacaccttcgatggtgagatctcat 37387632  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 577
Target Start/End: Original strand, 1417391 - 1417460
Alignment:
Q  508 tgttttctcttaggattcattgcgactttgagtgatttaaaaaatggatagaaattaaggtttgttcttt 577  Q
    |||||||||||||||||||||| || | || ||||| | |||||||| ||||||||| |  |||||||||    
T  1417391 tgttttctcttaggattcattgggagtgtgggtgatatgaaaaatgggtagaaattaggacttgttcttt 1417460  T

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