View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2194_low_32 (Length: 201)
Name: NF2194_low_32
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2194_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 10413189 - 10413347
Alignment:
| Q |
18 |
tattcttctagaaattagctaaaatcatatattccattatttgtttgtc---tgtatggaaaaattagctatgcatattcaaggaaaagtggaggatgga |
114 |
Q |
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| T |
10413189 |
tattcttctagaaattagctaaaatcaaatattcccttatttgtgtgtcctctgtacggaaaaattagctatgcatattcaaggaaaagtggaggatgga |
10413288 |
T |
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| Q |
115 |
agttggcggcctatccatatttcaaaggatggcccgggtctttcccatctcctttttgc |
173 |
Q |
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| T |
10413289 |
agttggcggcctatccatattttaaaggatggcccgggtctttcccatctcgtttttgc |
10413347 |
T |
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Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 50546039 - 50545926
Alignment:
| Q |
54 |
ttatttgtttgtc---tgtatggaaaaattagctatgcatattcaaggaaaagtggaggatggaagttggcggcctatccatatttcaaaggatggcccg |
150 |
Q |
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| T |
50546039 |
ttatttgtttgtcctttgtatggaaaaattagctatgcatattcaaggaaaagtggaggatcgaagttgacggcctatccatatttcaaaggatggcccg |
50545940 |
T |
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| Q |
151 |
ggtctttcccatct |
164 |
Q |
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| T |
50545939 |
ggtctttcccatct |
50545926 |
T |
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