View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2194_low_5 (Length: 528)
Name: NF2194_low_5
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2194_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 15 - 520
Target Start/End: Complemental strand, 30474623 - 30474120
Alignment:
| Q |
15 |
aataacaaacagtaaatatgtattttcaaaacatataatgcatactttaagcaatgtgacaaacaagaagtgaattcgtagaaaagtacagtttagtctt |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30474623 |
aataacaaacagtaaatatgtatgttcaaaacatataatgcatactttaagcaatgtgacaaacaagaagtgaattcgtagaaaagtacagtttagtctt |
30474524 |
T |
|
| Q |
115 |
gtctgcataatccgatgaaacnnnnnnncaaggagcaaaacaagccaacaggtaactagatttcactattctgatcacacacacaacaccatagatgtta |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30474523 |
gtctgcataatccgatgaaacaaaaaaacaaggagcaaaacaagacaacaggtaactagatttcactattctgatcacacacacaacaccatagatgtta |
30474424 |
T |
|
| Q |
215 |
ttcattcaactttaaacaggcaagtaaaatcatattaaaataaaaggaacaaaagtttatcagcccatgagccaaaaaagtaaactagatgatcattgat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30474423 |
ttcattcaactttaaacaggcaagtaaaatcatattaaaataaaaggaacaaaagtttatcagcccatgagccaaaaaagtaaacta--tgatcattgat |
30474326 |
T |
|
| Q |
315 |
catcaaatgagtaaaatttgaagggacaaaaacacttacacgaatcaattcttttcgagcatccaacaactcatcattactctgacgctccttaatgatt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30474325 |
catcaaatgagtaaaatttgaagggacaaaaacacttacacaaatcaattcttttcgagcatccaacaactcatcattactccgacgctccttaatgatt |
30474226 |
T |
|
| Q |
415 |
agtgtttggttcaaatcttttaagtcttcaattaactcttctttgtcacttaaatccatccgcaaagcatctacctttttcaaaagatcctcatcttctt |
514 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30474225 |
agtgttaggttcaaatcatttaagtcttcaagtaactcttctttgtcacttaaatccatccgcaaagcatctacctctttcaaaagatcctcatcttctt |
30474126 |
T |
|
| Q |
515 |
catctc |
520 |
Q |
| |
|
|||||| |
|
|
| T |
30474125 |
catctc |
30474120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 350 - 491
Target Start/End: Complemental strand, 30466046 - 30465905
Alignment:
| Q |
350 |
ttacacgaatcaattcttttcgagcatccaacaactcatcattactctgacgctccttaatgattagtgtttggttcaaatcttttaagtcttcaattaa |
449 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||| ||||||| || |||| ||| ||||||| | | |
|
|
| T |
30466046 |
ttacatgaatcaatatttttcgagcatattgcaactcatcattactcttatgctccttaatgattagtttttggttaaattcttctaactcttcaagtga |
30465947 |
T |
|
| Q |
450 |
ctcttctttgtcacttaaatccatccgcaaagcatctacctt |
491 |
Q |
| |
|
|||||||||||| || |||| |||| |||||||||||||||| |
|
|
| T |
30465946 |
ctcttctttgtctctcaaattcatcagcaaagcatctacctt |
30465905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 499
Target Start/End: Complemental strand, 30447249 - 30447098
Alignment:
| Q |
348 |
acttacacgaatcaattcttttcgagcatccaacaactcatcattactctgacgctccttaatgattagtgtttggttcaaatcttttaagtcttcaatt |
447 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||||| ||||||| ||||||||| ||||||||||||||||||| | | |||||||| || | |
|
|
| T |
30447249 |
acttacactgatcaattcttttcgagcatcttgcagctcatcgttactcttacgctccttgatgattagtgtttggttcagtgcatctaagtcttgaagt |
30447150 |
T |
|
| Q |
448 |
aactcttctttgtcacttaaatccatccgcaaagcatctacctttttcaaaa |
499 |
Q |
| |
|
||| ||| || || |||||| |||| ||||| |||||||||| ||||||| |
|
|
| T |
30447149 |
gactgttccttctcccttaaacccatatgcaaatcatctaccttcttcaaaa |
30447098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University