View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2194_low_6 (Length: 506)
Name: NF2194_low_6
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2194_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 460
Target Start/End: Complemental strand, 13290194 - 13289747
Alignment:
| Q |
13 |
aatataaataacaattatctttttaacaaaattaatagtgacnnnnnnngtatatcacagttcagagataaggtgaacaatgctgtagaaattgagtatt |
112 |
Q |
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| T |
13290194 |
aatataaataacaatgatctttttaacaaaattaatagtgacaaaaaaa-tatatcacagtacagagataaggtgaacaacgctgtagaaattgagtatt |
13290096 |
T |
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| Q |
113 |
gctatnnnnnnnn-tgtgtttccagataccaattttgatttgtataatatttcatcccgtcttgtttataagaaacatttaattttttagattcatcaat |
211 |
Q |
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| T |
13290095 |
gctataaaaaaaaatgtgtttccagataccaattctgatctgtataatatttcatctcgtcttgtttataagaaacacttaattttttagattcatcaat |
13289996 |
T |
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| Q |
212 |
tatttaattaattgaaagaagtctgttatttcttataaatagaactggagggtgtacaatactttttcttgtttaaaaaaccattttaaaattgcaagtg |
311 |
Q |
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| T |
13289995 |
tatttaattaataaaaaaaagtatgttctttcttataaatagtactggagggtgtacaatactttttcttgtttaaaaaaccattttaaaattgcaattg |
13289896 |
T |
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| Q |
312 |
aatccaaatgatgaagacagcatgcagatgatcaaacaataaatattttcaaaaacataattgcgtgagcgcgaagatcatttccacatgcaatgatata |
411 |
Q |
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| T |
13289895 |
gatccaaatgatgaagacagcatgcagatgatcaaacaataaatattttcaaaaacataattgcgtgagcgcgaagatcatttccacatgcaatgatata |
13289796 |
T |
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| Q |
412 |
acaattcacaatttcaactgaaagcaacaaaatgataataaaaatattt |
460 |
Q |
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| T |
13289795 |
acatttcataatttcaactgaaaacaacaaaatgataataaaaatattt |
13289747 |
T |
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