View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2194_low_7 (Length: 452)
Name: NF2194_low_7
Description: NF2194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2194_low_7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 452
Target Start/End: Complemental strand, 49131289 - 49130855
Alignment:
| Q |
13 |
aaaattgttacgtgctagagaattgcatgtgggattgaagctgtcattggcaatttgataaggtgaatattgtgggagaaaatggattagaagatcaaag |
112 |
Q |
| |
|
|||||||||| ||| || |||||||||||||||||||||||||||||| ||||||||||||| || | || ||||| ||||||||||||||||||||| |
|
|
| T |
49131289 |
aaaattgttatgtgttacagaattgcatgtgggattgaagctgtcatttacaatttgataaggcgattgttaagggaggaaatggattagaagatcaaag |
49131190 |
T |
|
| Q |
113 |
ttgttggtatttagttagcaaattgcatgtgatgagtccatgattgcacttgtttattcatttgagcttacgtggtacttacatggatatgtgtcggttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49131189 |
ttgttggtatttagttagcaaattgcatgtgatgagtccatgattgcacttgtttattcatttgagcttacgtggtacttacatggatatgtgtcggttg |
49131090 |
T |
|
| Q |
213 |
aaataaaataataaatctgaatgtaatgtttgtcatggtaggcagttctagctgtacttggtactatcatagtatatgatatatccatcctcttaagctc |
312 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49131089 |
aaataaa-taataaatctgaatgtaatgtttgtcatggtaggcagttctagctgtacttggtactatcttagtatatgatatatccatcctcttaagctc |
49130991 |
T |
|
| Q |
313 |
aatgattggggaatgcatgaaatctcgcttcattgcaattcctttgaactcaagactttttagcgaacaagtggtacatgcatgctaaattatatatcca |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49130990 |
aatgattggggaatgcatgaaatctcgcttcattgcaattcctttgaactcaagaatttttagcgaacaagtggtac----atgctaaattatatatcca |
49130895 |
T |
|
| Q |
413 |
ttagaaaaaactgtaaattatttgctatttatgcataaat |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49130894 |
ttagaaaaaactgtaaattatttgctatttatgcataaat |
49130855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University