View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2195_high_1 (Length: 521)

Name: NF2195_high_1
Description: NF2195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2195_high_1
NF2195_high_1
[»] chr4 (4 HSPs)
chr4 (17-353)||(51406664-51407002)
chr4 (191-353)||(50590357-50590519)
chr4 (187-278)||(8817659-8817750)
chr4 (476-511)||(51407125-51407160)
[»] chr5 (2 HSPs)
chr5 (187-352)||(33758549-33758714)
chr5 (191-351)||(9437168-9437328)
[»] chr7 (3 HSPs)
chr7 (191-321)||(15118002-15118132)
chr7 (252-312)||(10004340-10004400)
chr7 (222-321)||(10020292-10020390)
[»] chr3 (1 HSPs)
chr3 (241-319)||(51056053-51056131)
[»] chr2 (1 HSPs)
chr2 (222-305)||(7694620-7694705)
[»] chr6 (1 HSPs)
chr6 (222-311)||(27752354-27752444)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 51406664 - 51407002
Alignment:
Q  17 aatttcatgggtcgggtaggattttataggtggnnnnnnn--ctaaatggtgcacaaaaattatgacatttttaaaattgtgcaactaaatttttccaaa 114  Q
    |||||||||||||||||||||| ||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51406664 aatttcatgggtcgggtaggatcttataggtggaaaaaaaaactaaatggtgcacaaaaattatgacatttttaaaattgtgcaactaaatttttccaaa 51406763  T
Q  115 ttaaaataggatactgtaattgtgaatctcaaaaattattcaatataacaatatcaatattatcgtaaagcatctatctaacttcttcaccgccaaacac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51406764 ttaaaataggatactgtaattgtgaatctcaaaaattattcaacataacaatatcaatattatcgtaaagcatctatctaacttcttcaccgccaaacac 51406863  T
Q  215 ttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatcctttcca 314  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51406864 ttacccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagatggtggtggtgcgacggtcggctttagccatccgcaccatcctttcca 51406963  T
Q  315 gatctcctagaggtttccgcgtcggtagactgtggttgc 353  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  51406964 gatctcctggaggtttccgcgccggtagactgtggttgc 51407002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 191 - 353
Target Start/End: Complemental strand, 50590519 - 50590357
Alignment:
Q  191 tctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctt 290  Q
    ||||| ||| |||||||||||||||  ||| | || |||||||||||| ||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  50590519 tctaatttcctcaccgccaaacactcacccctctctcttttcatccaatttttaccgtcatcatgtagacatcaggtggtggtggtgcgacggtcggctt 50590420  T
Q  291 tagccatccgcaccatcctttccagatctcctagaggtttccgcgtcggtagactgtggttgc 353  Q
    |||||||||||||||  ||||||||||||||  ||||||  ||||||||| ||||||||||||    
T  50590419 tagccatccgcaccacactttccagatctcccggaggttgtcgcgtcggtggactgtggttgc 50590357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 8817750 - 8817659
Alignment:
Q  187 tctatctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgc 278  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8817750 tctatctaacttcttcaccgccaaacacttacccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgc 8817659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 511
Target Start/End: Original strand, 51407125 - 51407160
Alignment:
Q  476 aagtctcgattttggtggtaaaaggaggtgatgatg 511  Q
    ||||||||||||||||||||| ||||||||||||||    
T  51407125 aagtctcgattttggtggtaagaggaggtgatgatg 51407160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 187 - 352
Target Start/End: Complemental strand, 33758714 - 33758549
Alignment:
Q  187 tctatctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcg 286  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33758714 tctatctaacttctttaccgccaaacacttacccatttcccttttcatccaaattttgccgtcatcatgtagacatcagttggtggtggtgcgacggtcg 33758615  T
Q  287 gctttagccatccgcaccatcctttccagatctcctagaggtttccgcgtcggtagactgtggttg 352  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  33758614 gctttagccatccgcaccatcctttccagatctcccggaggtttccgcgccggtagactgtggttg 33758549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 191 - 351
Target Start/End: Complemental strand, 9437328 - 9437168
Alignment:
Q  191 tctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctt 290  Q
    ||||||||| |||||||||||||||| |   ||||||||||||| |||||||||   ||||| |||||||||||||||||||||||| ||||||||||||    
T  9437328 tctaacttcctcaccgccaaacacttactgctttcccttttcattcaaattttgcaatcatcgtgtagacatcagttggtggtggtgtgacggtcggctt 9437229  T
Q  291 tagccatccgcaccatcctttccagatctcctagaggtttccgcgtcggtagactgtggtt 351  Q
    ||||||||||||||| |||||| ||||||||   ||||| | || ||||| ||||||||||    
T  9437228 tagccatccgcaccaccctttctagatctcccgaaggttgctgcatcggtggactgtggtt 9437168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 191 - 321
Target Start/End: Original strand, 15118002 - 15118132
Alignment:
Q  191 tctaacttcttcaccgccaaacacttgcccatttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctt 290  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||    
T  15118002 tctaacttcctcaccgccaaacacttacccctttcccttttcatccaaattttgtcgtcatcatgtagacatcacttggtggtggtgtgacggtcgggtt 15118101  T
Q  291 tagccatccgcaccatcctttccagatctcc 321  Q
    ||||||||||||||| |||||||||||||||    
T  15118102 tagccatccgcaccaccctttccagatctcc 15118132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 312
Target Start/End: Complemental strand, 10004400 - 10004340
Alignment:
Q  252 catgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatcctttc 312  Q
    |||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||||||    
T  10004400 catgtagacaacagttgatggtggtgcgacgaacggctttagccatccacaccaccctttc 10004340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 321
Target Start/End: Complemental strand, 10020390 - 10020292
Alignment:
Q  222 tttcccttttcatccaaattttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatcctttccagatctcc 321  Q
    ||||| ||||||||||  ||||| | ||| |||||||||| |||||||||||||||| |  || | ||||||||||   ||||| |||||||||||||||    
T  10020390 tttccattttcatccagtttttgccttcaacatgtagacaacagttggtggtggtgc-aatgttgactttagccatttacaccaccctttccagatctcc 10020292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 241 - 319
Target Start/End: Original strand, 51056053 - 51056131
Alignment:
Q  241 tttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatcctttccagatct 319  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  51056053 tttggcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccacaccaccctttccagatct 51056131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 7694620 - 7694705
Alignment:
Q  222 tttcccttttcatccaaa--ttttgtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcacca 305  Q
    ||||||||||||||||||  ||||| | ||| ||||||| || || | ||||||||||||||||||| ||||||||||||||||||    
T  7694620 tttcccttttcatccaaagtttttgccttcaacatgtagccaacattaggtggtggtgcgacggtcgactttagccatccgcacca 7694705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 311
Target Start/End: Complemental strand, 27752444 - 27752354
Alignment:
Q  222 tttcccttttcatccaaatttt-gtcgtcatcatgtagacatcagttggtggtggtgcgacggtcggctttagccatccgcaccatccttt 311  Q
    ||||||||||||| |||||||| ||| |||  || ||||||  |||||||| ||||||||  |||||||||||||||| ||| || |||||    
T  27752444 tttcccttttcattcaaatttttgtcttcaatatttagacaaaagttggtgttggtgcgatagtcggctttagccatctgcatcacccttt 27752354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University