View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2195_high_3 (Length: 435)
Name: NF2195_high_3
Description: NF2195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2195_high_3 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 26835256 - 26835673
Alignment:
| Q |
1 |
aacctctctggtttgaactcattcacatcatctccccataattcagggtcatggtgcattcctactacatcaatccacatgttggttccattaggcactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26835256 |
aacctctctggtttgaactcattcacatcatctccccataattcagggtcatggtgcattgctactacatcaatccacatgttggttccattaggcactg |
26835355 |
T |
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| Q |
101 |
ttacattatcaactttaatgtcttctcttgtttgtctttgcacatttggtgatggtgggtatagtcttagaacttcattcatcacccatttcatctgcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26835356 |
ttacattatcaactttaatgtcttctcttgtttgtctttgcacatttggtgatggtgggtatagtcttaaaacttcattcatcacccatttcatctgcat |
26835455 |
T |
|
| Q |
201 |
attcacccaacaatcaatgcagtcaaccatattatatagtaacttgttgcgagatataaatattt--nnnnnnngatgatattccacgaatatttcattt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26835456 |
attcacccaacaatcaatgcagtcaaccatattatatggtaacttgttgcgagatataaatatttaaaaaaaaagatgatattccacgaatatttcattt |
26835555 |
T |
|
| Q |
299 |
atggtatatatgttggctgcgtggacataaacatgtagatcaaagtgaagtttgaccatccaaacaacgttgtttcaaaaacacacacgttactatgata |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26835556 |
atggtatatatgttggctgcgtggacataaacatgtagatcaaagtgaagtttgaccatccaaacaacattgtttcaaaaacacacacgttactatgata |
26835655 |
T |
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| Q |
399 |
ctgatatgattctgagac |
416 |
Q |
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| T |
26835656 |
ctactatgattctgagac |
26835673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 45420065 - 45420267
Alignment:
| Q |
1 |
aacctctctggtttgaactcattcacatcatctccccataattcagggtcatggtgcattcctactacatcaatccacatgttggttccattaggcactg |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45420065 |
aacctctctggtttgaaatcattcacatcatctccccataattctgggtcatggtgcatcgctactacatcaatccacatgttggttccattaggcactg |
45420164 |
T |
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| Q |
101 |
ttacattatcaactttaatgtcttctcttgtttgtctttgcacatttggtgatggtgggtatagtcttagaacttcattcatcacccatttcatctgcat |
200 |
Q |
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| T |
45420165 |
ttacatcatcaacttgaatgtcttctcttgcttgtctttgcacatttggtgctggtgggtatagtcttagaacttcattcatcacccatttcatctgcat |
45420264 |
T |
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| Q |
201 |
att |
203 |
Q |
| |
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||| |
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| T |
45420265 |
att |
45420267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 45410756 - 45410955
Alignment:
| Q |
1 |
aacctctctggtttgaactcattcacatcatctccccataattcagggtcatggtgcattcctactacatcaatccacatgttggttccattaggcactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
45410756 |
aacctctctggtttgaactcattcacatcatctccccataattctgggtcatggtgcatcgctactacatcaatccacatgtttgttccattaggcactg |
45410855 |
T |
|
| Q |
101 |
ttacattatcaactttaatgtcttctcttgtttgtctttgcacatttggtgatggtgggtatagtcttagaacttcattcatcacccatttcatctgcat |
200 |
Q |
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|||||| |||||||| ||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45410856 |
ttacatcatcaacttgaatatcttctcttgcttgtctttgcacatttggtgctggtgggtatagtcttagaacttcattcatcacacatttcatctgcat |
45410955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 203
Target Start/End: Original strand, 29799867 - 29800022
Alignment:
| Q |
48 |
gtcatggtgcattcctactacatcaatccacatgttggttccattaggcactgttacattatcaactttaatgtcttctcttgtttgtctttgcacattt |
147 |
Q |
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||||||||||||| | || || || |||||||| ||||| |||||||| | ||||| |||||||| ||||||||||||||| | ||| ||||| |||||| |
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| T |
29799867 |
gtcatggtgcattgcaacaacgtcgatccacatattggtcccattaggaattgttagattatcaagtttaatgtcttctctagattgcctttgaacattt |
29799966 |
T |
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| Q |
148 |
ggtgatggtgggtatagtcttagaacttcattcatcacccatttcatctgcatatt |
203 |
Q |
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|||| || |||||| || || | | |||||||||||||||| |||||||| ||||| |
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| T |
29799967 |
ggtgctgttgggtagagcctcaaagcttcattcatcacccacttcatctgaatatt |
29800022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 63630 - 63782
Alignment:
| Q |
48 |
gtcatggtgcattcctactacatcaatccacatgttggttccattaggcactgttacattatcaactttaatgtcttctcttgtttgtctttgcacattt |
147 |
Q |
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||||||||||||| |||| || |||||||| |||||||| || |||||||| ||| |||||| ||| ||| || || | | ||| |||||||||||| |
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| T |
63630 |
gtcatggtgcattgctacaacgtcaatccaaatgttggtccctttaggcacctttatattatctactcgaatatcctccttagcttgcctttgcacattt |
63729 |
T |
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| Q |
148 |
ggtgatggtgggtatagtcttagaacttcattcatcacccatttcatctgcat |
200 |
Q |
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|| ||||||||||| ||||| || ||||| || ||||||||||||||||||| |
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| T |
63730 |
ggagatggtgggtagagtctaagtgcttcactcctcacccatttcatctgcat |
63782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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