View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2195_high_4 (Length: 394)
Name: NF2195_high_4
Description: NF2195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2195_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 384
Target Start/End: Original strand, 25130223 - 25130587
Alignment:
| Q |
20 |
aaaatagcttatgcataagcacttaccatggtaagtagttatgctataagttgcaaattagtctgtctatccaaacagggactgtaaccacaatcttaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
25130223 |
aaaatagcttatgcataagcacttaccatggtaagtagttatgctataagttgcaaattaatctgtttatccaaacagggactgtaacaacaatcttaga |
25130322 |
T |
|
| Q |
120 |
tagtacacttaaggcttgtacaatagcaatgtatgtttagtaatttcgatgaaatactccgtacttcattttgtccattcacaagttcttacatagttag |
219 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25130323 |
tagtgcacttaaggcttgtacaatagcaatgtatgtttagtaatttcgataaaatactccgtacttcattttgtccattcacaagttcttacatagttag |
25130422 |
T |
|
| Q |
220 |
tctgaatactgaatgcatttgctatgctgcatatattttcattatgaaatattgagattactttgtaatgttacagttgcggtgataatggtaatggggg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25130423 |
tctgaatactgaatgcatttgctatgctgcatatattttcattatgaaatattgagattactttgtaatgttacagttgcggtgataatggtaatggggg |
25130522 |
T |
|
| Q |
320 |
tttatgggtcgatgagtgtggttctaggtccatgttcttcactcatcttgcaacctaaccctatg |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25130523 |
tttatgggtcgatgagtgtggttctaggtccatgttcttcactcatcttgcaacctaaccctatg |
25130587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 33128698 - 33128626
Alignment:
| Q |
25 |
agcttatgcataagcacttaccatggtaagtagttatgctataagttgcaaattagtctgtctatccaaacagg |
98 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| || |||| |||| ||||||| || |||| |||||||||||| |
|
|
| T |
33128698 |
agcttatgcataagcacttatcatgataagtgtttgtgctgtaagctgcaaataag-ctgtttatccaaacagg |
33128626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 28776934 - 28776855
Alignment:
| Q |
17 |
ataaaaatagcttatgcataagcacttaccatggtaagtagttatgctataagttgcaaattagtctgtctatccaaacag |
97 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| ||||| ||| |||||||| ||||||| ||| ||| ||||||||||| |
|
|
| T |
28776934 |
ataaaaatagcttatacataagcacttatcatgataagtgcttaggctataagctgcaaataagt-tgtttatccaaacag |
28776855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 39105419 - 39105363
Alignment:
| Q |
21 |
aaatagcttatgcataagcacttaccatggtaagtagttatgctataagttgcaaat |
77 |
Q |
| |
|
||||||||||| ||||||| |||| |||| |||| | |||||||||||| ||||||| |
|
|
| T |
39105419 |
aaatagcttatacataagcgcttatcatgataagcacttatgctataagctgcaaat |
39105363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 44863073 - 44863151
Alignment:
| Q |
17 |
ataaaaatagcttatgcataagcacttaccatggtaagtagttatgctataagttgcaaattagtctgtctatccaaaca |
96 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||| || ||||||||| ||||||| ||| ||| |||||||||| |
|
|
| T |
44863073 |
ataaaaatagcttatgcataagcacttatcatgacaagtgcttgtgctataagctgcaaataagt-tgtttatccaaaca |
44863151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 55084589 - 55084647
Alignment:
| Q |
21 |
aaatagcttatgcataagcacttaccatggtaagtagttatgctataagttgcaaatta |
79 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||| | |||||||||||||| ||||||| |
|
|
| T |
55084589 |
aaatagcttatgcataagcgcttatcatgataatcacttatgctataagtttcaaatta |
55084647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 2833445 - 2833500
Alignment:
| Q |
21 |
aaatagcttatgcataagcacttaccatggtaagtagttatgctataagttgcaaa |
76 |
Q |
| |
|
||||||||||| |||||||||||| |||| |||| | |||||||||||| |||||| |
|
|
| T |
2833445 |
aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa |
2833500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 2840314 - 2840259
Alignment:
| Q |
21 |
aaatagcttatgcataagcacttaccatggtaagtagttatgctataagttgcaaa |
76 |
Q |
| |
|
||||||||||| |||||||||||| |||| |||| | |||||||||||| |||||| |
|
|
| T |
2840314 |
aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa |
2840259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 2845001 - 2844946
Alignment:
| Q |
21 |
aaatagcttatgcataagcacttaccatggtaagtagttatgctataagttgcaaa |
76 |
Q |
| |
|
||||||||||| |||||||||||| |||| |||| | |||||||||||| |||||| |
|
|
| T |
2845001 |
aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa |
2844946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 264326 - 264249
Alignment:
| Q |
21 |
aaatagcttatgcataagcacttaccatggtaagtagttatgctataagttgcaaattagtctgtctatccaaacaggg |
99 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||| | || ||||||||| |||||||||| |||| |||||||||||| |
|
|
| T |
264326 |
aaatagcttatatataagcacttatcatgataagcacttgtgctataagctgcaaattag-ctgttaatccaaacaggg |
264249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University