View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2195_high_6 (Length: 299)
Name: NF2195_high_6
Description: NF2195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2195_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 41129157 - 41129437
Alignment:
| Q |
1 |
tcacttgttgtagttgtagcagcaccctcattaacctcaagcataaaatcctgttgttgaataaattccttgagattttgtattaattgtgactcaaact |
100 |
Q |
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| T |
41129157 |
tcacttgttgtagttgtagcagcaccctcattaacctcaagcataaaatcctgttgttgaataaattccttgagattttgtattaattgtgactcaaact |
41129256 |
T |
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| Q |
101 |
ccgcaggattcccaagcacatcattgtaaccgcgtcttgcaacacatcgaaatattctatactctcttggttccacttgccgaaacaaaaacctctcttc |
200 |
Q |
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| T |
41129257 |
ccgcaggattcccaagcacatcattgtaaccgcgtcttgcaacacatcgaaatattctatactctcttggttccacttgccgaaacaaaaacctctcttc |
41129356 |
T |
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| Q |
201 |
caaagcaactctattaaccggaattgtcttgatagaaacgaacacaacaactgaatgaatggatggtacgctagctataaa |
281 |
Q |
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| T |
41129357 |
caaagcaactctattaaccggaattgtcttgatagaaacgaacacaacaactgaatgaatggatggtacgctagctataaa |
41129437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 260
Target Start/End: Complemental strand, 7801957 - 7801757
Alignment:
| Q |
60 |
aataaattccttgagattttgtattaattgtgactcaaactccgcaggattcccaagcacatcattgtaaccgcgtcttgcaacacatcgaaatattcta |
159 |
Q |
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| T |
7801957 |
aataaattcctttagatgttgcaccaattgagactcaaactccatagaatctccaattacatcgttgtaaccatgccttacaatgcaacgaaatattttc |
7801858 |
T |
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| Q |
160 |
tactctcttggttccacttgccgaaacaaaaacctctcttccaaagcaactctattaaccggaattgtcttgatagaaacgaacacaacaactgaatgaa |
259 |
Q |
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| T |
7801857 |
cattctcttggctccacatgttgaaatagaaacttctcttccaatgcaacactagtaattggaattgccttaatggaaacaaatacaacaactgaatgaa |
7801758 |
T |
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| Q |
260 |
t |
260 |
Q |
| |
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| |
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| T |
7801757 |
t |
7801757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 36526992 - 36526960
Alignment:
| Q |
140 |
caacacatcgaaatattctatactctcttggtt |
172 |
Q |
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| T |
36526992 |
caacacatcgaaatattctatactcttttggtt |
36526960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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