View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2195_low_7 (Length: 263)
Name: NF2195_low_7
Description: NF2195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2195_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 44084969 - 44085203
Alignment:
| Q |
19 |
agtatacctttatggcctaccaaagccaaatctcttgacctatatatacctccattcctttgcacttaatttcattcataagcaaatacattcctaa--- |
115 |
Q |
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| T |
44084969 |
agtatacctttatggcctaccaaagccaaatctcttgacctatatatacctccattcctttgcacttaatttcattcataagcaaatacattcctaaata |
44085068 |
T |
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| Q |
116 |
tcaaatcctctcttattagttcctatacacctaactccctcgtgtaatattatagaaaaatattttgatacaccatgcacactattgcatacatgtataa |
215 |
Q |
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| T |
44085069 |
tcaaatcctctcttgttagttcctatacacctaactccctcgtgtaatattacagaaaaatattttgatacaccatgcacactattgcatacatgtataa |
44085168 |
T |
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| Q |
216 |
actcatattcaactcttgcattgcatactttcttc |
250 |
Q |
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| T |
44085169 |
actcatattcaactcttgcattgcatactttcttc |
44085203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 44095389 - 44095151
Alignment:
| Q |
19 |
agtatacctttatggcctaccaaagccaaatctcttgacctatatatacctccattcctttgcacttaatttcattcataagcaaatacattcctaatca |
118 |
Q |
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| T |
44095389 |
agtatacctgtatggcctacctaagccaaatctcttgatctatatatagcaccattcctttgcacttaatttcatacataagcaa--acatatataagca |
44095292 |
T |
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| Q |
119 |
aatcctctcttattagttcctatacacctaactc-cctcgtgtaatattatagaaaaatattttgatacac--catgcacactattgcat------acat |
209 |
Q |
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| T |
44095291 |
agtcctctcttattaattcctatacacctagctcttcccatataatattatagaaaaacattttgctacacaacatgcacaatatttcattttctaagat |
44095192 |
T |
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| Q |
210 |
gtataaactcatattcaactcttgcattgcatactttcttc |
250 |
Q |
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| T |
44095191 |
ggataaactcatattcaactcttgcattgcatactttcttc |
44095151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 44069976 - 44069902
Alignment:
| Q |
176 |
tattttgatacaccatgcacactattgcatacatgtataaactcatattcaactcttgcattgcatactttcttc |
250 |
Q |
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| T |
44069976 |
tattttgatacaccatgcacactattgcatacatgtataaactcatattcaactcttgcattgcatactttcttc |
44069902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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