View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2196_low_1 (Length: 564)

Name: NF2196_low_1
Description: NF2196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2196_low_1
NF2196_low_1
[»] chr6 (1 HSPs)
chr6 (334-554)||(21978316-21978536)
[»] chr1 (3 HSPs)
chr1 (31-185)||(24310986-24311143)
chr1 (31-93)||(24381860-24381922)
chr1 (62-143)||(24367897-24367978)
[»] chr4 (21 HSPs)
chr4 (49-186)||(48155593-48155730)
chr4 (36-187)||(45371174-45371325)
chr4 (96-187)||(48170196-48170287)
chr4 (82-187)||(48146946-48147051)
chr4 (124-187)||(7793666-7793730)
chr4 (47-139)||(49040354-49040445)
chr4 (31-111)||(48899537-48899618)
chr4 (47-179)||(50674654-50674787)
chr4 (128-187)||(7816827-7816887)
chr4 (85-152)||(48864839-48864906)
chr4 (218-264)||(50677578-50677624)
chr4 (99-187)||(50249857-50249946)
chr4 (227-264)||(50675181-50675218)
chr4 (384-425)||(50678387-50678428)
chr4 (80-143)||(7790896-7790959)
chr4 (39-150)||(45384043-45384153)
chr4 (35-152)||(37826132-37826249)
chr4 (39-115)||(45365267-45365343)
chr4 (36-185)||(48871403-48871556)
chr4 (36-185)||(48876707-48876860)
chr4 (101-185)||(49047749-49047833)
[»] chr7 (1 HSPs)
chr7 (31-115)||(48884647-48884731)
[»] chr2 (1 HSPs)
chr2 (444-512)||(41538935-41539003)
[»] chr8 (2 HSPs)
chr8 (85-132)||(12201154-12201201)
chr8 (85-132)||(12445582-12445629)
[»] chr3 (1 HSPs)
chr3 (244-313)||(29111536-29111606)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 334 - 554
Target Start/End: Complemental strand, 21978536 - 21978316
Alignment:
334 caaaataagaaagaaacaatttatttcttttgattttgatttaattttaatgttatgttagtgtccacctaagaacttctctgcacgtttaaatttaaca 433  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21978536 caaaataagaaagaaacaatttgtttcttttgattttgatttaattttaatgttatgttagtgtccacctaagaacttctctgcacgtttaaatttaaca 21978437  T
434 caacttagccaatagagtttggcacaagtaatagatacttggacctattaaccatttggtccagggttctatccatggcaagtacgtaaggaaagagatt 533  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||    
21978436 caacttagccaatagagtttggcacaagtgatagatacttggacctatcaaccatttggtccagggttctatctatggcaaggacgtaaggaaagagatt 21978337  T
534 aacccgttaaatagatctctg 554  Q
    ||||| |||||||||||||||    
21978336 aaccccttaaatagatctctg 21978316  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 185
Target Start/End: Original strand, 24310986 - 24311143
Alignment:
31 gatccaatatgtcgtgaaatgtttattg---cttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatg 127  Q
    ||||||||||||| ||||||||||||||   ||||||||| ||||| ||| ||||||||||||||||||||||||||| | ||||| ||   ||||||||    
24310986 gatccaatatgtcatgaaatgtttattgtttcttaactatttgtaatatgtttattggaaatattggcagctttgtttctatgatttactcatatttatg 24311085  T
128 catgtgtaactggattgagttctaaatgatgttgtcgtcactgctttaaattgtttta 185  Q
    ||||||| | ||||||  |||||||   |||||||  ||||||||| ||||| |||||    
24311086 catgtgtgattggattctgttctaatgcatgttgtgttcactgcttgaaattatttta 24311143  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 24381860 - 24381922
Alignment:
31 gatccaatatgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattg 93  Q
    ||||||| ||||| |||||||||||||| |||||||| ||||||||| |||||||||||||||    
24381860 gatccaacatgtcatgaaatgtttattggttaactatttgtaacatgtttattggaaatattg 24381922  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 24367897 - 24367978
Alignment:
62 aactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaactggatt 143  Q
    |||||| ||||| ||| ||||  | ||||||| |||||||||||| | ||||||| | ||||||||||||||||||| ||||    
24367897 aactatttgtaatatgtttatgagtaatattgacagctttgtttgggcgattcactattatttatgcatgtgtaacttgatt 24367978  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 186
Target Start/End: Complemental strand, 48155730 - 48155593
Alignment:
49 atgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaactggattgagtt 148  Q
    |||||||||| | |||||| ||||  ||| || ||||  || ||| ||||||||||||||||||||||   ||||||| ||||||| |||||||||||||    
48155730 atgtttattggtcaactatttgtagtatgtttgttgggcatgttgacagctttgtttgtgtgattcactgatatttatacatgtgtcactggattgagtt 48155631  T
149 ctaaatgatgttgtcgtcactgctttaaattgttttat 186  Q
    ||||   ||||||| |||| ||||| ||||||||||||    
48155630 ctaatgtatgttgtggtcattgcttgaaattgttttat 48155593  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 45371325 - 45371174
Alignment:
36 aatatgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgta 135  Q
    |||||||| |||||||||||||| |||| | | ||||| ||| || |||||||  ||| || || ||||||||||||||||   ||||||||||||||||    
45371325 aatatgtcatgaaatgtttattgattaattgtttgtaatatgcttcttggaaactttgacaactctgtttgtgtgattcacttttatttatgcatgtgta 45371226  T
136 actggattgagttctaaatgatgttgtcgtcactgctttaaattgttttata 187  Q
      |||||||||||||||   |||||||  |||||| |  |||||||||||||    
45371225 gttggattgagttctaatgtatgttgtgatcactgttagaaattgttttata 45371174  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 48170287 - 48170196
Alignment:
96 agctttgtttgtgtgattcaccagtatttatgcatgtgtaactggattgagttctaaatgatgttgtcgtcactgctttaaattgttttata 187  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||| ||||   ||||||| |||||||||  ||||||| |||||    
48170287 agctttgtttgtgtgattcactgttatttatgcatgtgtaactggattgagtgctaatgtatgttgtggtcactgctagaaattgtattata 48170196  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 48147051 - 48146946
Alignment:
82 ttggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaactggattgagttctaaatgatgttgtcgtcactgctttaaattgt 181  Q
    |||||||| ||| || ||||||||| ||||||||    |||||||||||||||||||||||||||||||||   ||||||| |||||||| | |||||||    
48147051 ttggaaatgttgacaactttgtttgcgtgattcagtgttatttatgcatgtgtaactggattgagttctaatgtatgttgtggtcactgcctgaaattgt 48146952  T
182 tttata 187  Q
    | ||||    
48146951 tctata 48146946  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 7793730 - 7793666
Alignment:
124 tatgcatgtgtaactggattgagttctaaatg-atgttgtcgtcactgctttaaattgttttata 187  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||    
7793730 tatgcatgtgtaactggattgaattctaaatgcatgttgttgtcactgcttgaaattgttttata 7793666  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 49040445 - 49040354
Alignment:
47 aaatgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaactg 139  Q
    |||||| ||||| |||||||||||||| ||| ||||||| ||||||| || |||||||||||||||| || | || |||||||||||||||||    
49040445 aaatgtatattggttaactatctgtaatatgcttattggtaatattgacaactttgtttgtgtgattaactatta-ttatgcatgtgtaactg 49040354  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 48899537 - 48899618
Alignment:
31 gatccaatatgtcgtgaaatgtttattgcttaactatct-gtaacatggttattggaaatattggcagctttgtttgtgtga 111  Q
    ||||||||||||| |||||||||||||| || ||||| | | || ||| ||||||||||||||| |||||||||||||||||    
48899537 gatccaatatgtcatgaaatgtttattgtttcactattttgcaatatgcttattggaaatattgacagctttgtttgtgtga 48899618  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 179
Target Start/End: Original strand, 50674654 - 50674787
Alignment:
47 aaatgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaactggattgag 146  Q
    |||||||||||  |||||||  || || ||| ||||||||||||||| ||||||||||||||||| ||     |||||||||||||||| ||  ||||||    
50674654 aaatgtttatttgttaactagttgcaatatgcttattggaaatattgacagctttgtttgtgtgactcgttgctatttatgcatgtgtagctttattgag 50674753  T
147 ttctaaatg-atgttgtcgtcactgctttaaatt 179  Q
    ||||||||| |||| || |||| ||||| |||||    
50674754 ttctaaatgtatgtcgttgtcattgcttgaaatt 50674787  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 7816887 - 7816827
Alignment:
128 catgtgtaactggattgagttctaaatg-atgttgtcgtcactgctttaaattgttttata 187  Q
    |||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||    
7816887 catgtgtaactggattgaattctaaatgcatgttgttgtcactgcttgaaattgttttata 7816827  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 48864839 - 48864906
Alignment:
85 gaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaactggattgagttctaa 152  Q
    ||||| ||||||||||||||||||||| |||    ||||||||||||||||||||||||| |||||||    
48864839 gaaatgttggcagctttgtttgtgtgaatcattgttatttatgcatgtgtaactggattgggttctaa 48864906  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 50677578 - 50677624
Alignment:
218 atccctcttttctattaattcctaacttgttacatccttttcttttg 264  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||    
50677578 atccctcttttctattaaatcctaacttgttacatcctttccttttg 50677624  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 50249946 - 50249857
Alignment:
99 tttgtttgtgtgattcaccagtatttatgcatgtgtaactggattgagttctaaat-gatgttgtcgtcactgctttaaattgttttata 187  Q
    |||||||||| |||||||   ||||||||||| ||||||||||| |||||||||||  ||||||| |||||||  | |||||||||||||    
50249946 tttgtttgtgcgattcactgttatttatgcatttgtaactggatagagttctaaatatatgttgttgtcactgtctgaaattgttttata 50249857  T

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Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 50675181 - 50675218
Alignment:
227 ttctattaattcctaacttgttacatccttttcttttg 264  Q
    ||||||||||||||||||||||||||||||||||||||    
50675181 ttctattaattcctaacttgttacatccttttcttttg 50675218  T

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Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 425
Target Start/End: Original strand, 50678387 - 50678428
Alignment:
384 tgttatgttagtgtccacctaagaacttctctgcacgtttaa 425  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
50678387 tgttatgttagtgtccacctaagaacttctctgcatgtttaa 50678428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 7790896 - 7790959
Alignment:
80 tattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaactggatt 143  Q
    |||||||||||||| | ||||||||||||||| ||||   ||||||||||| ||||||||||||    
7790896 tattggaaatattgactgctttgtttgtgtgactcactgttatttatgcatctgtaactggatt 7790959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 45384153 - 45384043
Alignment:
39 atgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaact 138  Q
    ||||| || ||||| ||||| ||||| || ||||| ||| |||||| |||||||| || || ||||||||||||||||   ||||  |||||||||||||    
45384153 atgtcatgcaatgtctattggttaacaatttgtaatatgcttattg-aaatattgacaactctgtttgtgtgattcactgttattcttgcatgtgtaact 45384055  T
139 ggattgagttct 150  Q
     |||||||||||    
45384054 tgattgagttct 45384043  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 37826249 - 37826132
Alignment:
35 caatatgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgt 134  Q
    |||||| || |||||||||||||| |||||| | || || ||| |||||  |||||||| ||| |||| || |||| ||||    ||||||||||| |||    
37826249 caatatttcatgaaatgtttattggttaactgtttggaatatgcttattacaaatattgacagttttgattatgtgtttcattgttatttatgcatatgt 37826150  T
135 aactggattgagttctaa 152  Q
    || |||||||||||||||    
37826149 aattggattgagttctaa 37826132  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 45365343 - 45365267
Alignment:
39 atgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattca 115  Q
    ||||| || ||||||||||| ||||| || ||||| ||| |||||||||| ||||  | ||||||||||||||||||    
45365343 atgtcatgcaatgtttattggttaacaatttgtaatatgcttattggaaacattgatatctttgtttgtgtgattca 45365267  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 48871403 - 48871556
Alignment:
36 aatatgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattggcagcttt----gtttgtgtgattcaccagtatttatgcatg 131  Q
    |||||||  |||| ||||||||||||| |||| | ||| ||| |||||| |||| ||| || ||||    || |||||||||||    ||||| || |||    
48871403 aatatgttatgaactgtttattgcttagctatttataatatgtttattgaaaatgttgacaactttaattgtctgtgtgattcaatgttatttgtgaatg 48871502  T
132 tgtaactggattgagttctaaatgatgttgtcgtcactgctttaaattgtttta 185  Q
    ||||| ||||||||| |||||   ||||| | |||||||||| |||||||||||    
48871503 tgtaattggattgagctctaatgtatgttttggtcactgcttgaaattgtttta 48871556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 48876707 - 48876860
Alignment:
36 aatatgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattggcagcttt----gtttgtgtgattcaccagtatttatgcatg 131  Q
    |||||||  |||| ||||||||||||| |||| | ||| ||| |||||| |||| ||| || ||||    || |||||||||||    ||||| || |||    
48876707 aatatgttatgaactgtttattgcttagctatttataatatgtttattgaaaatgttgacaactttaattgtctgtgtgattcaatgttatttgtgaatg 48876806  T
132 tgtaactggattgagttctaaatgatgttgtcgtcactgctttaaattgtttta 185  Q
    ||||| ||||||||| |||||   ||||| | |||||||||| |||||||||||    
48876807 tgtaattggattgagctctaatgtatgttttggtcactgcttgaaattgtttta 48876860  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 49047833 - 49047749
Alignment:
101 tgtttgtgtgattcaccagtatttatgcatgtgtaactggattgagttctaaatgatgttgtcgtcactgctttaaattgtttta 185  Q
    ||||||||||||| || | | |||||||| |||||| |||||  | |||||||  ||||||| | |||||||| |||||||||||    
49047833 tgtttgtgtgatttactattgtttatgcacgtgtaattggatctaattctaaagcatgttgtgggcactgcttgaaattgtttta 49047749  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 48884647 - 48884731
Alignment:
31 gatccaatatgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattca 115  Q
    ||||||||||| | ||||||||||| || |||| ||| | |||  |||||||||||||||||| |||||||||| ||| ||||||    
48884647 gatccaatatgacatgaaatgtttagtggttaattatttttaatttggttattggaaatattgacagctttgttagtgcgattca 48884731  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 512
Target Start/End: Original strand, 41538935 - 41539003
Alignment:
444 aatagagtttggcacaagtaatagatacttggacctattaaccatttggtccagggttctatccatggc 512  Q
    |||| ||||||||||||||  |||||||||||  || ||||||||| |||||||||||| |||| ||||    
41538935 aatatagtttggcacaagtgctagatacttgggtctcttaaccattcggtccagggttcgatccctggc 41539003  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 12201154 - 12201201
Alignment:
85 gaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgt 132  Q
    ||||||||||| ||||||||||||||||||||   |||||||||||||    
12201154 gaaatattggctgctttgtttgtgtgattcactgttatttatgcatgt 12201201  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 12445582 - 12445629
Alignment:
85 gaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgt 132  Q
    ||||||||||| ||||||||||||||||||||   |||||||||||||    
12445582 gaaatattggctgctttgtttgtgtgattcactgttatttatgcatgt 12445629  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 29111606 - 29111536
Alignment:
244 ttgttacatccttttcttttgaaatttt-tctgatttgatacgctaatgaatgtgagtgacccgctactca 313  Q
    |||||||||| ||||||||||  ||||| | ||||||||||| || |||||||||||||| || |||||||    
29111606 ttgttacatctttttcttttgtcattttctgtgatttgataccctgatgaatgtgagtgatccactactca 29111536  T

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