View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2196_low_1 (Length: 564)
Name: NF2196_low_1
Description: NF2196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2196_low_1 |
 |  |
|
Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 334 - 554
Target Start/End: Complemental strand, 21978536 - 21978316
Alignment:
| Q |
334 |
caaaataagaaagaaacaatttatttcttttgattttgatttaattttaatgttatgttagtgtccacctaagaacttctctgcacgtttaaatttaaca |
433 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21978536 |
caaaataagaaagaaacaatttgtttcttttgattttgatttaattttaatgttatgttagtgtccacctaagaacttctctgcacgtttaaatttaaca |
21978437 |
T |
 |
| Q |
434 |
caacttagccaatagagtttggcacaagtaatagatacttggacctattaaccatttggtccagggttctatccatggcaagtacgtaaggaaagagatt |
533 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
21978436 |
caacttagccaatagagtttggcacaagtgatagatacttggacctatcaaccatttggtccagggttctatctatggcaaggacgtaaggaaagagatt |
21978337 |
T |
 |
| Q |
534 |
aacccgttaaatagatctctg |
554 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
21978336 |
aaccccttaaatagatctctg |
21978316 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 185
Target Start/End: Original strand, 24310986 - 24311143
Alignment:
| Q |
31 |
gatccaatatgtcgtgaaatgtttattg---cttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatg |
127 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||| | ||||| || |||||||| |
|
|
| T |
24310986 |
gatccaatatgtcatgaaatgtttattgtttcttaactatttgtaatatgtttattggaaatattggcagctttgtttctatgatttactcatatttatg |
24311085 |
T |
 |
| Q |
128 |
catgtgtaactggattgagttctaaatgatgttgtcgtcactgctttaaattgtttta |
185 |
Q |
| |
|
||||||| | |||||| ||||||| ||||||| ||||||||| ||||| ||||| |
|
|
| T |
24311086 |
catgtgtgattggattctgttctaatgcatgttgtgttcactgcttgaaattatttta |
24311143 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 24381860 - 24381922
Alignment:
| Q |
31 |
gatccaatatgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattg |
93 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
24381860 |
gatccaacatgtcatgaaatgtttattggttaactatttgtaacatgtttattggaaatattg |
24381922 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 24367897 - 24367978
Alignment:
| Q |
62 |
aactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaactggatt |
143 |
Q |
| |
|
|||||| ||||| ||| |||| | ||||||| |||||||||||| | ||||||| | ||||||||||||||||||| |||| |
|
|
| T |
24367897 |
aactatttgtaatatgtttatgagtaatattgacagctttgtttgggcgattcactattatttatgcatgtgtaacttgatt |
24367978 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 21)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 186
Target Start/End: Complemental strand, 48155730 - 48155593
Alignment:
| Q |
49 |
atgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaactggattgagtt |
148 |
Q |
| |
|
|||||||||| | |||||| |||| ||| || |||| || ||| |||||||||||||||||||||| ||||||| ||||||| ||||||||||||| |
|
|
| T |
48155730 |
atgtttattggtcaactatttgtagtatgtttgttgggcatgttgacagctttgtttgtgtgattcactgatatttatacatgtgtcactggattgagtt |
48155631 |
T |
 |
| Q |
149 |
ctaaatgatgttgtcgtcactgctttaaattgttttat |
186 |
Q |
| |
|
|||| ||||||| |||| ||||| |||||||||||| |
|
|
| T |
48155630 |
ctaatgtatgttgtggtcattgcttgaaattgttttat |
48155593 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 45371325 - 45371174
Alignment:
| Q |
36 |
aatatgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgta |
135 |
Q |
| |
|
|||||||| |||||||||||||| |||| | | ||||| ||| || ||||||| ||| || || |||||||||||||||| |||||||||||||||| |
|
|
| T |
45371325 |
aatatgtcatgaaatgtttattgattaattgtttgtaatatgcttcttggaaactttgacaactctgtttgtgtgattcacttttatttatgcatgtgta |
45371226 |
T |
 |
| Q |
136 |
actggattgagttctaaatgatgttgtcgtcactgctttaaattgttttata |
187 |
Q |
| |
|
||||||||||||||| ||||||| |||||| | ||||||||||||| |
|
|
| T |
45371225 |
gttggattgagttctaatgtatgttgtgatcactgttagaaattgttttata |
45371174 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 48170287 - 48170196
Alignment:
| Q |
96 |
agctttgtttgtgtgattcaccagtatttatgcatgtgtaactggattgagttctaaatgatgttgtcgtcactgctttaaattgttttata |
187 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||| ||||| |
|
|
| T |
48170287 |
agctttgtttgtgtgattcactgttatttatgcatgtgtaactggattgagtgctaatgtatgttgtggtcactgctagaaattgtattata |
48170196 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 48147051 - 48146946
Alignment:
| Q |
82 |
ttggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaactggattgagttctaaatgatgttgtcgtcactgctttaaattgt |
181 |
Q |
| |
|
|||||||| ||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| | ||||||| |
|
|
| T |
48147051 |
ttggaaatgttgacaactttgtttgcgtgattcagtgttatttatgcatgtgtaactggattgagttctaatgtatgttgtggtcactgcctgaaattgt |
48146952 |
T |
 |
| Q |
182 |
tttata |
187 |
Q |
| |
|
| |||| |
|
|
| T |
48146951 |
tctata |
48146946 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 7793730 - 7793666
Alignment:
| Q |
124 |
tatgcatgtgtaactggattgagttctaaatg-atgttgtcgtcactgctttaaattgttttata |
187 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
7793730 |
tatgcatgtgtaactggattgaattctaaatgcatgttgttgtcactgcttgaaattgttttata |
7793666 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 49040445 - 49040354
Alignment:
| Q |
47 |
aaatgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaactg |
139 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||| ||||||| ||||||| || |||||||||||||||| || | || ||||||||||||||||| |
|
|
| T |
49040445 |
aaatgtatattggttaactatctgtaatatgcttattggtaatattgacaactttgtttgtgtgattaactatta-ttatgcatgtgtaactg |
49040354 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 48899537 - 48899618
Alignment:
| Q |
31 |
gatccaatatgtcgtgaaatgtttattgcttaactatct-gtaacatggttattggaaatattggcagctttgtttgtgtga |
111 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||| | | || ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
48899537 |
gatccaatatgtcatgaaatgtttattgtttcactattttgcaatatgcttattggaaatattgacagctttgtttgtgtga |
48899618 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 179
Target Start/End: Original strand, 50674654 - 50674787
Alignment:
| Q |
47 |
aaatgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaactggattgag |
146 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||| || |||||| |
|
|
| T |
50674654 |
aaatgtttatttgttaactagttgcaatatgcttattggaaatattgacagctttgtttgtgtgactcgttgctatttatgcatgtgtagctttattgag |
50674753 |
T |
 |
| Q |
147 |
ttctaaatg-atgttgtcgtcactgctttaaatt |
179 |
Q |
| |
|
||||||||| |||| || |||| ||||| ||||| |
|
|
| T |
50674754 |
ttctaaatgtatgtcgttgtcattgcttgaaatt |
50674787 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 7816887 - 7816827
Alignment:
| Q |
128 |
catgtgtaactggattgagttctaaatg-atgttgtcgtcactgctttaaattgttttata |
187 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
7816887 |
catgtgtaactggattgaattctaaatgcatgttgttgtcactgcttgaaattgttttata |
7816827 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 48864839 - 48864906
Alignment:
| Q |
85 |
gaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaactggattgagttctaa |
152 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
48864839 |
gaaatgttggcagctttgtttgtgtgaatcattgttatttatgcatgtgtaactggattgggttctaa |
48864906 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 50677578 - 50677624
Alignment:
| Q |
218 |
atccctcttttctattaattcctaacttgttacatccttttcttttg |
264 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
50677578 |
atccctcttttctattaaatcctaacttgttacatcctttccttttg |
50677624 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 50249946 - 50249857
Alignment:
| Q |
99 |
tttgtttgtgtgattcaccagtatttatgcatgtgtaactggattgagttctaaat-gatgttgtcgtcactgctttaaattgttttata |
187 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||| ||||||| ||||||| | ||||||||||||| |
|
|
| T |
50249946 |
tttgtttgtgcgattcactgttatttatgcatttgtaactggatagagttctaaatatatgttgttgtcactgtctgaaattgttttata |
50249857 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 50675181 - 50675218
Alignment:
| Q |
227 |
ttctattaattcctaacttgttacatccttttcttttg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50675181 |
ttctattaattcctaacttgttacatccttttcttttg |
50675218 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 425
Target Start/End: Original strand, 50678387 - 50678428
Alignment:
| Q |
384 |
tgttatgttagtgtccacctaagaacttctctgcacgtttaa |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50678387 |
tgttatgttagtgtccacctaagaacttctctgcatgtttaa |
50678428 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 7790896 - 7790959
Alignment:
| Q |
80 |
tattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaactggatt |
143 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| |||| ||||||||||| |||||||||||| |
|
|
| T |
7790896 |
tattggaaatattgactgctttgtttgtgtgactcactgttatttatgcatctgtaactggatt |
7790959 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 45384153 - 45384043
Alignment:
| Q |
39 |
atgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgtaact |
138 |
Q |
| |
|
||||| || ||||| ||||| ||||| || ||||| ||| |||||| |||||||| || || |||||||||||||||| |||| ||||||||||||| |
|
|
| T |
45384153 |
atgtcatgcaatgtctattggttaacaatttgtaatatgcttattg-aaatattgacaactctgtttgtgtgattcactgttattcttgcatgtgtaact |
45384055 |
T |
 |
| Q |
139 |
ggattgagttct |
150 |
Q |
| |
|
||||||||||| |
|
|
| T |
45384054 |
tgattgagttct |
45384043 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 37826249 - 37826132
Alignment:
| Q |
35 |
caatatgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgtgt |
134 |
Q |
| |
|
|||||| || |||||||||||||| |||||| | || || ||| ||||| |||||||| ||| |||| || |||| |||| ||||||||||| ||| |
|
|
| T |
37826249 |
caatatttcatgaaatgtttattggttaactgtttggaatatgcttattacaaatattgacagttttgattatgtgtttcattgttatttatgcatatgt |
37826150 |
T |
 |
| Q |
135 |
aactggattgagttctaa |
152 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
37826149 |
aattggattgagttctaa |
37826132 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 45365343 - 45365267
Alignment:
| Q |
39 |
atgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattca |
115 |
Q |
| |
|
||||| || ||||||||||| ||||| || ||||| ||| |||||||||| |||| | |||||||||||||||||| |
|
|
| T |
45365343 |
atgtcatgcaatgtttattggttaacaatttgtaatatgcttattggaaacattgatatctttgtttgtgtgattca |
45365267 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 48871403 - 48871556
Alignment:
| Q |
36 |
aatatgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattggcagcttt----gtttgtgtgattcaccagtatttatgcatg |
131 |
Q |
| |
|
||||||| |||| ||||||||||||| |||| | ||| ||| |||||| |||| ||| || |||| || ||||||||||| ||||| || ||| |
|
|
| T |
48871403 |
aatatgttatgaactgtttattgcttagctatttataatatgtttattgaaaatgttgacaactttaattgtctgtgtgattcaatgttatttgtgaatg |
48871502 |
T |
 |
| Q |
132 |
tgtaactggattgagttctaaatgatgttgtcgtcactgctttaaattgtttta |
185 |
Q |
| |
|
||||| ||||||||| ||||| ||||| | |||||||||| ||||||||||| |
|
|
| T |
48871503 |
tgtaattggattgagctctaatgtatgttttggtcactgcttgaaattgtttta |
48871556 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 48876707 - 48876860
Alignment:
| Q |
36 |
aatatgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattggcagcttt----gtttgtgtgattcaccagtatttatgcatg |
131 |
Q |
| |
|
||||||| |||| ||||||||||||| |||| | ||| ||| |||||| |||| ||| || |||| || ||||||||||| ||||| || ||| |
|
|
| T |
48876707 |
aatatgttatgaactgtttattgcttagctatttataatatgtttattgaaaatgttgacaactttaattgtctgtgtgattcaatgttatttgtgaatg |
48876806 |
T |
 |
| Q |
132 |
tgtaactggattgagttctaaatgatgttgtcgtcactgctttaaattgtttta |
185 |
Q |
| |
|
||||| ||||||||| ||||| ||||| | |||||||||| ||||||||||| |
|
|
| T |
48876807 |
tgtaattggattgagctctaatgtatgttttggtcactgcttgaaattgtttta |
48876860 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 49047833 - 49047749
Alignment:
| Q |
101 |
tgtttgtgtgattcaccagtatttatgcatgtgtaactggattgagttctaaatgatgttgtcgtcactgctttaaattgtttta |
185 |
Q |
| |
|
||||||||||||| || | | |||||||| |||||| ||||| | ||||||| ||||||| | |||||||| ||||||||||| |
|
|
| T |
49047833 |
tgtttgtgtgatttactattgtttatgcacgtgtaattggatctaattctaaagcatgttgtgggcactgcttgaaattgtttta |
49047749 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 48884647 - 48884731
Alignment:
| Q |
31 |
gatccaatatgtcgtgaaatgtttattgcttaactatctgtaacatggttattggaaatattggcagctttgtttgtgtgattca |
115 |
Q |
| |
|
||||||||||| | ||||||||||| || |||| ||| | ||| |||||||||||||||||| |||||||||| ||| |||||| |
|
|
| T |
48884647 |
gatccaatatgacatgaaatgtttagtggttaattatttttaatttggttattggaaatattgacagctttgttagtgcgattca |
48884731 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 512
Target Start/End: Original strand, 41538935 - 41539003
Alignment:
| Q |
444 |
aatagagtttggcacaagtaatagatacttggacctattaaccatttggtccagggttctatccatggc |
512 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| || ||||||||| |||||||||||| |||| |||| |
|
|
| T |
41538935 |
aatatagtttggcacaagtgctagatacttgggtctcttaaccattcggtccagggttcgatccctggc |
41539003 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 12201154 - 12201201
Alignment:
| Q |
85 |
gaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgt |
132 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
12201154 |
gaaatattggctgctttgtttgtgtgattcactgttatttatgcatgt |
12201201 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 12445582 - 12445629
Alignment:
| Q |
85 |
gaaatattggcagctttgtttgtgtgattcaccagtatttatgcatgt |
132 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
12445582 |
gaaatattggctgctttgtttgtgtgattcactgttatttatgcatgt |
12445629 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 29111606 - 29111536
Alignment:
| Q |
244 |
ttgttacatccttttcttttgaaatttt-tctgatttgatacgctaatgaatgtgagtgacccgctactca |
313 |
Q |
| |
|
|||||||||| |||||||||| ||||| | ||||||||||| || |||||||||||||| || ||||||| |
|
|
| T |
29111606 |
ttgttacatctttttcttttgtcattttctgtgatttgataccctgatgaatgtgagtgatccactactca |
29111536 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University