View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2196_low_3 (Length: 460)

Name: NF2196_low_3
Description: NF2196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2196_low_3
NF2196_low_3
[»] chr4 (3 HSPs)
chr4 (1-442)||(3250892-3251316)
chr4 (4-43)||(3271484-3271523)
chr4 (4-43)||(3284995-3285034)


Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 3250892 - 3251316
Alignment:
Q  1 aaaatggtttaaggaaccaatgtgtttggagtgcatgcacttacttagactgtgactaagagtaaaggataaagggtatttatatagtgatggcatcaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3250892 aaaatggtttaaggaaccaatgtgtttggagtgcatgcacttacttagactgtgactaagagtaaaggataaagggtatttatatagtgatggcatcaac 3250991  T
Q  101 tactttccttttttcacactcctcataaccacctcagctgagcacatactttgaaatacataggaccaaaagaagggaaaataaattgcttttgatgcca 200  Q
    ||||||||||||||||||||||||                 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  3250992 tactttccttttttcacactcctc-----------------gcacatactttgaaatacataggaccaaaaaaagggaaaataaattgcttttgatgtca 3251074  T
Q  201 gcaattcatattatattatatgattttgattttatgaattgattttgtaagatgagtttactttagagtgagttgaatgtgaaattggtttatatttgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3251075 gcaattcatattatattatatgattttgattttatgaattgattttgtaagatgagtttactttagagtgagttgaatgtgaaattggtttatatttgaa 3251174  T
Q  301 tacgttcgtgcaaaaatgaatgttaaaatcaattttaaaaccaatagatacaaattctcactcgaagttaaaaccaattataaagacaaaattaattaca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3251175 tacgttcgtgcaaaaatgaatgttaaaatcaattttaaaaccaatagatacaaattctcactcgaagttaaaaccaattataaagacaaaattaattaca 3251274  T
Q  401 atcaagtaacgttgattaaaatcaattttatgtgtcagtaat 442  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3251275 atcaagtaacgttgattaaaatcaattttatgtgtcagtaat 3251316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 3271484 - 3271523
Alignment:
Q  4 atggtttaaggaaccaatgtgtttggagtgcatgcactta 43  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  3271484 atggtttaaggaaccaatgtgtttggagtagatgcactta 3271523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 3284995 - 3285034
Alignment:
Q  4 atggtttaaggaaccaatgtgtttggagtgcatgcactta 43  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  3284995 atggtttaaggaaccaatgtgtttggagtagatgcactta 3285034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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