View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2196_low_5 (Length: 351)
Name: NF2196_low_5
Description: NF2196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2196_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 51390226 - 51390544
Alignment:
| Q |
1 |
gcggcttgggctgagttgattttgattcaaatgtttgtgcctaatgtgtcgtttttaggtcatcttagtggtatacttgctggacttgtgtatttgagat |
100 |
Q |
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| T |
51390226 |
gcggcttgggctgagttgattttgattcaaatgtttgtgcctaatgtgtcgtttttaggtcatcttagtggtatacttgctggacttgtgtatttgagat |
51390325 |
T |
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| Q |
101 |
tcagacgaaatttctcgggttcaaatccgttgaattctattgttaggggttttaattctatttttagggggtttaattctgtgttgaattggcctgtgaa |
200 |
Q |
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| T |
51390326 |
tcagacgaaatttctcgggttcaaatccgttgaat---------------------tctattgttaggggttttaattctgtgttgaattggcctgtgaa |
51390404 |
T |
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| Q |
201 |
gttttttagggatttgtttgggtttaggagagaaaggattactggtaggggaactgtcggccgtacggggaggaatgctgcccgggttgctgctgattgg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51390405 |
gttttttagggatttgtttgggtttaggagagaaaggattactggtaggggaactgtcggccgtacggggaggaatgctgcccaggttgctgctgattgg |
51390504 |
T |
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| Q |
301 |
agatgtcaggcttgtacttatgataattctggtttgatga |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
51390505 |
agatgtcaggcttgtacttatgataattctggtttgatga |
51390544 |
T |
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