View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2197_high_11 (Length: 290)
Name: NF2197_high_11
Description: NF2197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2197_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 31042342 - 31042075
Alignment:
| Q |
10 |
gatgaaccagcatgacatatatagtgtgacaagaatgcctatcatgaaaattaataatgaagatgcactggtgtagaaattcagcaaggatggaaaatat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31042342 |
gatgaaccagcatgacatatatagtgtgacaagaatgcctatcatgcaaattaataatgaagatgcactggtgtagaaattcagcaaggatggaaaatat |
31042243 |
T |
|
| Q |
110 |
aaagtttggttggcctatagtccctcatagattcatcactatcaagctgtcagtactgcgacgttttggtggaggatgactggcattgttttctcagatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31042242 |
aaagtttggttggcctatagtccctcatagattcatcactatcaagctgtcagtactgcgacgttttgatggaggatgactggcattgttttctcagatt |
31042143 |
T |
|
| Q |
210 |
atggcattatggaaagcttctttctcatgaagctgaatgtatagca---ttatggcaagcattagaat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31042142 |
atggcattatggaaagcttctttctcatgaagctgaatgtatagcattattatggcaagcattagaat |
31042075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 31069264 - 31069154
Alignment:
| Q |
20 |
catgacatatatagtgtgacaa-gaatgcctatcatgaaaattaataatgaagatgcactggtgtagaaattcagcaaggatggaaaatataaagtttgg |
118 |
Q |
| |
|
|||||||||||||| |||| || ||| ||||| ||| | |||||||||||||||||||||||||||||||| |||||||||| || ||||| |||| || |
|
|
| T |
31069264 |
catgacatatatagagtgaaaaagaacacctattatgcatattaataatgaagatgcactggtgtagaaattgagcaaggatgaaatatatacagttcgg |
31069165 |
T |
|
| Q |
119 |
ttggcctatag |
129 |
Q |
| |
|
| ||||||||| |
|
|
| T |
31069164 |
tcggcctatag |
31069154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 31055380 - 31055321
Alignment:
| Q |
70 |
agatgcactggtgtagaaattcagcaaggatggaaaatataaagtttggttggcctatag |
129 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||||||| || | ||| ||||||||| |
|
|
| T |
31055380 |
agatggactggtgtagaaatccagcaaggatagaaaatatacagctcggtcggcctatag |
31055321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University