View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2197_high_12 (Length: 278)
Name: NF2197_high_12
Description: NF2197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2197_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 18463198 - 18463401
Alignment:
| Q |
19 |
tgctagcgagttgcattcgatcgtaaaaccttggccatttagaggatgggatctagacataattgataaaatcaaacctggttcgtcgggaagacattga |
118 |
Q |
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| T |
18463198 |
tgctagcgagttgcattcaatcgtaaaaacttggccatttagaggatgggatctagacataattggtaaaatcaaacctggttcgtcgggaagacatcga |
18463297 |
T |
|
| Q |
119 |
tacatgttggttgggatagattattttaccaaataggtagaagtcatcccattacgagatgttaatcaagaagtggttattaatttcattcaaaatcata |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18463298 |
tacatgttggttgggatagattattttaccaaatgggtagaagtcatcccattacgagatgttaatcaagaagtggttattaatttcattcaaaatcata |
18463397 |
T |
|
| Q |
219 |
tttt |
222 |
Q |
| |
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|||| |
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| T |
18463398 |
tttt |
18463401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 14145440 - 14145643
Alignment:
| Q |
19 |
tgctagcgagttgcattcgatcgtaaaaccttggccatttagaggatgggatctagacataattgataaaatcaaacctggttcgtcgggaagacattga |
118 |
Q |
| |
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|||||| || || ||||||||| ||||||||||||||||||||||||||| |||||| |||||| | |||| |||||| |||| || |||||| || || |
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| T |
14145440 |
tgctagtgaattacattcgatcataaaaccttggccatttagaggatgggctctagatgtaattggtgaaataaaacctagttcctcaggaagaaatcga |
14145539 |
T |
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| Q |
119 |
tacatgttggttgggatagattattttaccaaataggtagaagtcatcccattacgagatgttaatcaagaagtggttattaatttcattcaaaatcata |
218 |
Q |
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| T |
14145540 |
tacatattggttagaatagactattttaccaaatgggtagaagctatcctacaaaaagatgtaacccaagaagtggttattaatttcattcagaatcata |
14145639 |
T |
|
| Q |
219 |
tttt |
222 |
Q |
| |
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|||| |
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| T |
14145640 |
tttt |
14145643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 4637308 - 4637511
Alignment:
| Q |
19 |
tgctagcgagttgcattcgatcgtaaaaccttggccatttagaggatgggatctagacataattgataaaatcaaacctggttcgtcgggaagacattga |
118 |
Q |
| |
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|||||| ||||| ||||||| ||||| ||||||||||||||||||||| ||| ||| ||| | | | || |||||||||||||| | | || | |
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| T |
4637308 |
tgctagtgagttacattcgactgtaaagccttggccatttagaggatggactctggacgtaaacggtgagattaaacctggttcgtcaaaagggcacaaa |
4637407 |
T |
|
| Q |
119 |
tacatgttggttgggatagattattttaccaaataggtagaagtcatcccattacgagatgttaatcaagaagtggttattaatttcattcaaaatcata |
218 |
Q |
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||||| |||||||| ||||| ||||| ||||||| |||||||| |||||| ||| || | |||| |||||| ||||| |||| |||||||||||| |||| |
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| T |
4637408 |
tacatattggttggaatagactatttcaccaaatgggtagaagccatccctttaagaaaggttactcaagatgtggtcattagtttcattcaaaaccata |
4637507 |
T |
|
| Q |
219 |
tttt |
222 |
Q |
| |
|
|||| |
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|
| T |
4637508 |
tttt |
4637511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 22461281 - 22461177
Alignment:
| Q |
118 |
atacatgttggttgggatagattattttaccaaataggtagaagtcatcccattacgagatgttaatcaagaagtggttattaatttcattcaaaatcat |
217 |
Q |
| |
|
|||||| ||||| || ||||| ||||| ||||||| |||||| | ||| || ||| | | |||| |||||| ||||| |||| |||||||||||| ||| |
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| T |
22461281 |
atacatattggtcggaatagactatttcaccaaatgggtagacgccattcctttaaggaaggttactcaagatgtggtcattagtttcattcaaaaccat |
22461182 |
T |
|
| Q |
218 |
atttt |
222 |
Q |
| |
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||||| |
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|
| T |
22461181 |
atttt |
22461177 |
T |
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