View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2197_low_1 (Length: 821)
Name: NF2197_low_1
Description: NF2197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2197_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 520 - 802
Target Start/End: Complemental strand, 39299171 - 39298889
Alignment:
| Q |
520 |
tggagaaagcagcacaagccaaagatgcaactcttgagaaaacacaacaaggttatgaagcaacaaaagacactgtttcaagcgctgcaaaaactgcaac |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39299171 |
tggagaaagcagcacaagccaaagatgcaactgttgagaaaacacaacaaggttatgaagcaacaaaagacactgtttcaagcgctgcaaaaactgcaac |
39299072 |
T |
|
| Q |
620 |
agaatatgctacccctgtggcggagaaagccaagtctgcagttgttcaggcaaaggatgttactgtagagacagggaagactgctgcggaagttgcaagc |
719 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39299071 |
agaatatgttacccctgtggcggagaaagccaagtctgcagttgttcaggcaaaggatgttactgtagagacagggaagactgctgcggaagttgcaagc |
39298972 |
T |
|
| Q |
720 |
aaagtggcggttgatttgaaggataaggccaccgtggcagggtggactgcggcacattattcgacgaagttgaccgtggatgg |
802 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39298971 |
aaagtggcggttgatttgaaggataaggccaccgtggcagggtggactgcggcacattattcgacgaagttgaccgtggatgg |
39298889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 39299679 - 39299562
Alignment:
| Q |
12 |
atgaacagaggaatgggaacaggacaagttgtggccgagaaaggaagaaaaacagaggatttaggaacaagaggtgaaggaaaagtacctggtgctggaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39299679 |
atgaacagaggaatgggaacaggacaagttgtggcagagaaaggaagaaaaacagaggatttaggaacaagaggtgaaggaaaagtacctggtgctggaa |
39299580 |
T |
|
| Q |
112 |
atgtaggttcaatgtggg |
129 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
39299579 |
atgtaggttcgatgtggg |
39299562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 220 - 328
Target Start/End: Complemental strand, 39299471 - 39299363
Alignment:
| Q |
220 |
ttggtggtgaaaatgaaggtgtaatcttgggaaagagtgtagctgagcaaagaggaagagcgggtgctggaaatgaaggtgcaatgttgggaaaaagtgg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39299471 |
ttggtggtgaaaatgaaggtgtaatcttgggaaagagtgttgctgagcaaagaggaagagcgggtgctggaaatgaaggtgcaatgttgggaaaaagtgc |
39299372 |
T |
|
| Q |
320 |
tgctgaaca |
328 |
Q |
| |
|
||||||||| |
|
|
| T |
39299371 |
tgctgaaca |
39299363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 359 - 444
Target Start/End: Complemental strand, 39299332 - 39299247
Alignment:
| Q |
359 |
aatgtctttggaagagatagggaagtatagaaaccaagcacaacaaaatgaaatggacgcaatctcagcagcacaagagaggtatg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39299332 |
aatgtctttggaagagatagggaagtatagaaaccaagcacaacaaaatgaaatggacgcaatctcagcagcacaagagaggtatg |
39299247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University