View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2197_low_11 (Length: 312)

Name: NF2197_low_11
Description: NF2197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2197_low_11
NF2197_low_11
[»] chr6 (21 HSPs)
chr6 (9-252)||(22702948-22703191)
chr6 (22-252)||(22697772-22698002)
chr6 (9-252)||(21402011-21402254)
chr6 (82-252)||(29490812-29490982)
chr6 (105-252)||(2817401-2817548)
chr6 (105-252)||(34142781-34142928)
chr6 (105-252)||(34155397-34155544)
chr6 (105-252)||(6727777-6727924)
chr6 (105-252)||(34376464-34376611)
chr6 (105-252)||(24190654-24190802)
chr6 (105-252)||(31983475-31983622)
chr6 (22-94)||(31981832-31981904)
chr6 (22-94)||(34376198-34376270)
chr6 (256-302)||(22699738-22699784)
chr6 (22-94)||(24191126-24191198)
chr6 (22-94)||(24192223-24192295)
chr6 (22-82)||(34142358-34142418)
chr6 (22-82)||(34154974-34155034)
chr6 (41-94)||(6728193-6728246)
chr6 (22-94)||(2817901-2817973)
chr6 (9-65)||(29491005-29491061)
[»] chr5 (23 HSPs)
chr5 (9-252)||(17510328-17510571)
chr5 (9-252)||(42019843-42020086)
chr5 (9-226)||(17505223-17505440)
chr5 (9-252)||(42024623-42024866)
chr5 (9-226)||(43579930-43580147)
chr5 (14-226)||(41858861-41859071)
chr5 (116-226)||(41853846-41853956)
chr5 (105-225)||(1413100-1413220)
chr5 (105-226)||(36254517-36254638)
chr5 (105-252)||(24770605-24770752)
chr5 (105-221)||(26709688-26709804)
chr5 (105-221)||(26979422-26979538)
chr5 (105-195)||(24776116-24776206)
chr5 (22-94)||(1413806-1413878)
chr5 (256-302)||(17508630-17508676)
chr5 (256-302)||(41857149-41857195)
chr5 (256-302)||(42023542-42023588)
chr5 (22-94)||(24776563-24776635)
chr5 (256-302)||(24772849-24772895)
chr5 (22-94)||(26709372-26709444)
chr5 (22-94)||(26979106-26979178)
chr5 (22-94)||(36254105-36254177)
chr5 (22-94)||(24771108-24771180)
[»] chr4 (35 HSPs)
chr4 (9-252)||(8984987-8985230)
chr4 (9-252)||(13700780-13701023)
chr4 (9-252)||(21304535-21304778)
chr4 (9-252)||(8979867-8980110)
chr4 (9-252)||(21299415-21299658)
chr4 (9-252)||(54991746-54991989)
chr4 (22-226)||(39999405-39999609)
chr4 (22-226)||(40004363-40004567)
chr4 (22-226)||(54343539-54343743)
chr4 (22-226)||(54348693-54348897)
chr4 (9-252)||(54990392-54990635)
chr4 (22-226)||(36359664-36359868)
chr4 (22-226)||(36354478-36354682)
chr4 (105-226)||(53798329-53798450)
chr4 (105-252)||(41393858-41394005)
chr4 (105-226)||(51018732-51018853)
chr4 (105-252)||(9763273-9763420)
chr4 (105-252)||(13695757-13695904)
chr4 (105-252)||(13711370-13711517)
chr4 (105-252)||(4207042-4207188)
chr4 (105-225)||(47045647-47045767)
chr4 (22-94)||(13695431-13695503)
chr4 (22-94)||(9763771-9763843)
chr4 (22-94)||(41393512-41393584)
chr4 (22-94)||(53797898-53797970)
chr4 (256-302)||(13699067-13699113)
chr4 (256-302)||(21301325-21301371)
chr4 (256-302)||(36357870-36357916)
chr4 (256-302)||(40002798-40002844)
chr4 (22-104)||(51019117-51019199)
chr4 (256-302)||(54346932-54346978)
chr4 (22-94)||(13710938-13711010)
chr4 (22-94)||(47046060-47046132)
chr4 (256-302)||(8981777-8981823)
chr4 (256-302)||(13702945-13702991)
[»] chr1 (18 HSPs)
chr1 (9-252)||(27711593-27711836)
chr1 (9-226)||(37404026-37404243)
chr1 (9-226)||(37409145-37409362)
chr1 (23-226)||(34317840-34318043)
chr1 (9-226)||(27716713-27716930)
chr1 (22-226)||(36684270-36684474)
chr1 (9-226)||(11250731-11250948)
chr1 (105-252)||(5725365-5725512)
chr1 (105-252)||(3585301-3585448)
chr1 (105-251)||(5730771-5730917)
chr1 (105-226)||(48245998-48246119)
chr1 (167-226)||(50959010-50959069)
chr1 (256-302)||(27715000-27715046)
chr1 (22-94)||(5730374-5730446)
chr1 (22-94)||(3584870-3584942)
chr1 (256-302)||(37405908-37405954)
chr1 (22-104)||(48246427-48246509)
chr1 (256-302)||(5728674-5728721)
[»] scaffold0517 (2 HSPs)
scaffold0517 (9-226)||(3833-4050)
scaffold0517 (256-302)||(2120-2166)
[»] chr7 (31 HSPs)
chr7 (22-252)||(33238338-33238568)
chr7 (22-252)||(33243515-33243745)
chr7 (22-226)||(47994136-47994340)
chr7 (22-226)||(47999311-47999515)
chr7 (105-252)||(21080321-21080468)
chr7 (105-226)||(2233978-2234099)
chr7 (105-252)||(32211965-32212112)
chr7 (105-252)||(42572600-42572747)
chr7 (105-226)||(17496100-17496221)
chr7 (105-226)||(17556993-17557114)
chr7 (105-252)||(12935084-12935231)
chr7 (105-252)||(19308876-19309023)
chr7 (105-252)||(47176496-47176643)
chr7 (112-226)||(16538699-16538813)
chr7 (112-226)||(16626849-16626963)
chr7 (105-252)||(43893542-43893689)
chr7 (173-252)||(47544749-47544828)
chr7 (22-94)||(2234384-2234456)
chr7 (22-94)||(12934666-12934738)
chr7 (256-302)||(33241732-33241778)
chr7 (256-302)||(47997529-47997575)
chr7 (22-94)||(19309365-19309437)
chr7 (22-94)||(21080793-21080865)
chr7 (22-94)||(42572214-42572286)
chr7 (22-94)||(43893138-43893210)
chr7 (22-94)||(16539166-16539238)
chr7 (22-94)||(16626424-16626496)
chr7 (22-94)||(17495672-17495744)
chr7 (22-94)||(17557470-17557542)
chr7 (22-94)||(47176904-47176976)
chr7 (22-82)||(32212419-32212479)
[»] chr3 (29 HSPs)
chr3 (9-226)||(55129060-55129276)
chr3 (9-219)||(17368989-17369199)
chr3 (22-252)||(20090191-20090421)
chr3 (22-252)||(20095316-20095546)
chr3 (22-226)||(15762585-15762789)
chr3 (22-226)||(15767746-15767950)
chr3 (105-252)||(3481649-3481796)
chr3 (105-226)||(34128437-34128558)
chr3 (105-226)||(17358566-17358686)
chr3 (105-226)||(30338126-30338247)
chr3 (105-252)||(30341204-30341351)
chr3 (105-226)||(54271312-54271433)
chr3 (105-195)||(3476249-3476339)
chr3 (105-195)||(4117007-4117097)
chr3 (22-94)||(3482166-3482238)
chr3 (22-94)||(17358107-17358179)
chr3 (22-94)||(54270914-54270986)
chr3 (256-302)||(3478439-3478485)
chr3 (256-302)||(15764511-15764557)
chr3 (256-302)||(17362634-17362680)
chr3 (256-302)||(17367276-17367322)
chr3 (256-302)||(20092142-20092188)
chr3 (22-94)||(4117345-4117417)
chr3 (22-94)||(30338506-30338578)
chr3 (22-94)||(34128923-34128995)
chr3 (22-94)||(3476699-3476771)
chr3 (22-94)||(10321712-10321784)
chr3 (43-94)||(30341720-30341771)
chr3 (24-69)||(10321816-10321861)
[»] scaffold0014 (3 HSPs)
scaffold0014 (22-226)||(31881-32085)
scaffold0014 (22-226)||(26709-26913)
scaffold0014 (256-302)||(30102-30148)
[»] chr2 (14 HSPs)
chr2 (9-252)||(40392589-40392832)
chr2 (22-226)||(42728175-42728379)
chr2 (22-225)||(42723007-42723210)
chr2 (22-226)||(44096638-44096842)
chr2 (35-226)||(44754161-44754352)
chr2 (35-226)||(44759327-44759518)
chr2 (9-226)||(40518075-40518297)
chr2 (35-223)||(40519929-40520122)
chr2 (105-252)||(4162895-4163042)
chr2 (105-252)||(28751021-28751168)
chr2 (256-302)||(42724940-42724986)
chr2 (256-302)||(44756092-44756138)
chr2 (22-94)||(4163331-4163403)
chr2 (22-94)||(28751483-28751555)
[»] scaffold0055 (1 HSPs)
scaffold0055 (22-226)||(3360-3564)
[»] scaffold0052 (1 HSPs)
scaffold0052 (22-226)||(80971-81175)
[»] chr8 (22 HSPs)
chr8 (22-226)||(32010862-32011066)
chr8 (22-226)||(32016036-32016240)
chr8 (9-252)||(2165394-2165638)
chr8 (105-252)||(43998546-43998693)
chr8 (105-252)||(17955134-17955281)
chr8 (105-226)||(24885324-24885445)
chr8 (105-252)||(42513848-42513995)
chr8 (105-195)||(21641184-21641273)
chr8 (22-104)||(24884982-24885064)
chr8 (256-302)||(21645574-21645620)
chr8 (256-302)||(32014255-32014301)
chr8 (22-94)||(21643835-21643907)
chr8 (22-94)||(21643020-21643092)
chr8 (22-94)||(21643395-21643467)
chr8 (23-86)||(42514182-42514245)
chr8 (22-94)||(21641520-21641592)
chr8 (22-94)||(21641895-21641967)
chr8 (22-94)||(21642270-21642342)
chr8 (22-94)||(21642645-21642717)
chr8 (22-94)||(43998984-43999056)
chr8 (258-298)||(19434003-19434043)
chr8 (258-298)||(19570152-19570192)
[»] scaffold0594 (2 HSPs)
scaffold0594 (105-252)||(8534-8681)
scaffold0594 (22-94)||(8962-9034)
[»] scaffold0166 (5 HSPs)
scaffold0166 (105-252)||(12986-13133)
scaffold0166 (105-195)||(18500-18590)
scaffold0166 (256-302)||(15233-15279)
scaffold0166 (22-94)||(13493-13565)
scaffold0166 (22-94)||(18946-19018)
[»] scaffold0060 (2 HSPs)
scaffold0060 (105-163)||(37654-37712)
scaffold0060 (22-104)||(37279-37361)
[»] scaffold0165 (1 HSPs)
scaffold0165 (256-302)||(15542-15588)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 22703191 - 22702948
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703191 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 22703092  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703091 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 22702992  T
Q  209 tcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  22702991 tcactagtatactccaagtttttttcattatacactagtgttcc 22702948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 252
Target Start/End: Complemental strand, 22698002 - 22697772
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22698002 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 22697903  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22697902 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 22697803  T
Q  222 ccaagnnnnnnncattatacactagtgttcc 252  Q
    |||||       |||||||||||||||||||    
T  22697802 ccaagtttttttcattatacactagtgttcc 22697772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 21402011 - 21402254
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||| | |||||||||||||||| |||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  21402011 ggagaagagaggagagaaaaccaaagaagagtattcgattcttagtttttgagtgatgaatactattcccaagctctcaatttataaggaggatttctac 21402110  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21402111 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 21402210  T
Q  209 tcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    |||||| |||||||||||       |||||||||||||||||||    
T  21402211 tcactactatactccaagtttttttcattatacactagtgttcc 21402254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 82 - 252
Target Start/End: Complemental strand, 29490982 - 29490812
Alignment:
Q  82 ctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29490982 ctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttg 29490883  T
Q  182 tgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||    
T  29490882 tgtttacattccaaaagctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 29490812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 2817548 - 2817401
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817548 ctactagagtgtgtgatctacccaatgtgggacattaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 2817449  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  2817448 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 2817401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 34142781 - 34142928
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34142781 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 34142880  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34142881 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34142928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 34155397 - 34155544
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34155397 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 34155496  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34155497 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34155544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 6727924 - 6727777
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  6727924 ctactagagtgtgtgatctacccaatgtggaacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 6727825  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  6727824 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 6727777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 34376464 - 34376611
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  34376464 ctactagagtgtgttatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 34376563  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34376564 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34376611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 24190802 - 24190654
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaa-ttttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctcca 203  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||     
T  24190802 ctactagagtgtgtgatctacccaatgtgggacataaaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcct 24190703  T
Q  204 caaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    || |   ||||||||||||||||       || ||||||||||||||||    
T  24190702 cataacaactagtatactccaagtttttgccaatatacactagtgttcc 24190654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 31983475 - 31983622
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| | |||| |    
T  31983475 ctactagagtgtgtgatctacccaatgcgggacataaaattttcaattcacactttacactaatttctacatcattgtgtttacattccaatgtctcctc 31983574  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  31983575 ataaaaactagtatactccaagtttttgccaatatacactagtgttcc 31983622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 31981832 - 31981904
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||||| |||||||    
T  31981832 gagaaaaccagagaagagtattcgattctcggttttggagtgaagaataccaatcccgagctctctatttata 31981904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 34376198 - 34376270
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  34376198 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 34376270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 22699784 - 22699738
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22699784 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 22699738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 24191198 - 24191126
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||||||| | |||||||||||||| |||||||    
T  24191198 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 24191126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 24192295 - 24192223
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||||||| | |||||||||||||| |||||||    
T  24192295 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 24192223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 34142358 - 34142418
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagc 82  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | ||||||||||    
T  34142358 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaattcccgagc 34142418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 34154974 - 34155034
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagc 82  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | ||||||||||    
T  34154974 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaattcccgagc 34155034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 6728246 - 6728193
Alignment:
Q  41 attcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  6728246 attcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 6728193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 2817973 - 2817901
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||  |||||||||| ||||||   |||||||||||||| |||||||    
T  2817973 gagaaaaccagagaagaggattcgattcttggttttggagtaaagaatctcattcccgagctctctatttata 2817901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 29491061 - 29491005
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaa 65  Q
    |||| |||||||||| |||| |||| ||||||||| |||||||||||||||||||||    
T  29491061 ggagaagagaggagataaaatcagagaagagtatttgattctcagttttggagtgaa 29491005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 17510328 - 17510571
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510328 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 17510427  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510428 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 17510527  T
Q  209 tcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  17510528 tcactagtatactccaagtttttttcattatacactagtgttcc 17510571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 42019843 - 42020086
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42019843 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 42019942  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42019943 tagagtgtgtgatctatccgatgtgggacataaaattttcaattcacattttacattagtttctccatccttgtgtttacattccaaaggctccacaaac 42020042  T
Q  209 tcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  42020043 tcactagtatactccaagtttttttcattatacactagtgttcc 42020086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 17505223 - 17505440
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17505223 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 17505322  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  17505323 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacaatagtttttccatccttgtgtttacattccaaaggctccacaaac 17505422  T
Q  209 tcactagtatactccaag 226  Q
    ||||||||||| ||||||    
T  17505423 tcactagtatattccaag 17505440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 42024623 - 42024866
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42024623 ggagaagagaggagagaaaaccagagaagagtattcgattctcaattttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 42024722  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42024723 tagagtgtgtgatctatccgatgtgggacataaaattttcaattcacattttacactagtttctccatccttatgtttacattccaaaggctccacaaac 42024822  T
Q  209 tcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||| ||||       |||||||||||||||||||    
T  42024823 tcactagtatacttcaagtttttttcattatacactagtgttcc 42024866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 43579930 - 43580147
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43579930 ggagaagagaggagagaaaatcagagaagagtattcgattctcagttttggtgtgaaaaatactattcccgagctctcaatttataaggaggatttctac 43580029  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43580030 tagagtatgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 43580129  T
Q  209 tcactagtatactccaag 226  Q
    ||||||||||||||||||    
T  43580130 tcactagtatactccaag 43580147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 41858861 - 41859071
Alignment:
Q  14 agagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagag 113  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41858861 agagagaagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggagaatttctactagag 41858960  T
Q  114 tgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 213  Q
    |||  |||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  41858961 tgt--gatctacccgatgtgggacatagaattttcaattcacactttacactaatttttccatccttgtgtttacattccaaaggctccacaaactcact 41859058  T
Q  214 agtatactccaag 226  Q
    |||||||||||||    
T  41859059 agtatactccaag 41859071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 41853846 - 41853956
Alignment:
Q  116 tgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactag 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41853846 tgtgatctacccgatgtgggacatagaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactccctag 41853945  T
Q  216 tatactccaag 226  Q
    |||||||||||    
T  41853946 tatactccaag 41853956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 1413220 - 1413100
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1413220 ctactagagtgtgtgatctactcaatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccac 1413121  T
Q  205 aaactcactagtatactccaa 225  Q
    | |   |||||||||||||||    
T  1413120 ataacaactagtatactccaa 1413100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 36254517 - 36254638
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||    
T  36254517 ctactagagtgtgtgatctacccaatgtggaacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaatgtctccac 36254616  T
Q  205 aaactcactagtatactccaag 226  Q
    | |   ||||||||||||||||    
T  36254617 ataacaactagtatactccaag 36254638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 24770752 - 24770605
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  24770752 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 24770653  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  24770652 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 24770605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 26709688 - 26709804
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    |||||| | ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26709688 ctactacaatgtgtaatctactcaatgtgggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccataggctccac 26709787  T
Q  205 aaactcactagtatact 221  Q
    ||||  |||||||||||    
T  26709788 aaaccaactagtatact 26709804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 26979422 - 26979538
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    |||||| | ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26979422 ctactacaatgtgtaatctactcaatgtgggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccataggctccac 26979521  T
Q  205 aaactcactagtatact 221  Q
    ||||  |||||||||||    
T  26979522 aaaccaactagtatact 26979538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 24776206 - 24776116
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 195  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  24776206 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttatactagtttctacatcattgtgtttacattccaa 24776116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 1413878 - 1413806
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  1413878 gagaaaaccagataagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 1413806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 17508630 - 17508676
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17508630 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17508676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 41857149 - 41857195
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41857149 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 41857195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 42023542 - 42023588
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42023542 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 42023588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 24776635 - 24776563
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||||||||||||||| |||||||||| |||||||| | ||| |||||||| |||||||    
T  24776635 gagaaaaccagagaagagtattcgattctcggttttggagtaaagaataccaatcctgagctctctatttata 24776563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 24772895 - 24772849
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  24772895 catcagtggcgtaccttttcccaacaaaaataccattcttagtgatg 24772849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 26709372 - 26709444
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||| | ||||| |||| |||||||||||||||||||||||| | | |||||||||||| |||||||    
T  26709372 gagaaaaccaaagaagaggattcaattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 26709444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 26979106 - 26979178
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||| | ||||| |||| |||||||||||||||||||||||| | | |||||||||||| |||||||    
T  26979106 gagaaaaccaaagaagaggattcaattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 26979178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 36254105 - 36254177
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||| ||| ||||| ||||||||||| ||||||||||||||||| | |||||| ||||||| |||||||    
T  36254105 gagaaaactagagaagaggattcgattctcggttttggagtgaagaatcccattcccaagctctctatttata 36254177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 24771180 - 24771108
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| |||||| || ||||||  |||||||||| |||||||| | ||| |||||||| |||||||    
T  24771180 gagaaaaccagagaagagtgtttgattcttggttttggagtaaagaataccaatcctgagctctctatttata 24771108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 8985230 - 8984987
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8985230 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 8985131  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8985130 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 8985031  T
Q  209 tcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  8985030 tcactagtatactccaagtttttttcattatacactagtgttcc 8984987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 13700780 - 13701023
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13700780 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 13700879  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13700880 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 13700979  T
Q  209 tcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  13700980 tcactagtatactccaagtttttttcattatacactagtgttcc 13701023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 21304778 - 21304535
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21304778 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 21304679  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21304678 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 21304579  T
Q  209 tcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  21304578 tcactagtatactccaagtttttttcattatacactagtgttcc 21304535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 8980110 - 8979867
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8980110 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattctcgagctctcaatttataaggaggatttctac 8980011  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8980010 tagagtgtgtgatctacccgatatgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 8979911  T
Q  209 tcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  8979910 tcactagtatactccaagtttttttcattatacactagtgttcc 8979867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 21299658 - 21299415
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21299658 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 21299559  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21299558 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccacaaac 21299459  T
Q  209 tcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  21299458 tcactagtatactccaagtttttttcattatacactagtgttcc 21299415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 54991746 - 54991989
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54991746 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttgaagtgaagaatactattcccgagctttcaatttataaggaggatttctac 54991845  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54991846 tagagtgtgtgatctatccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 54991945  T
Q  209 tcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  54991946 tcactagtatactccaagtttttttcattatacactagtgttcc 54991989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 39999405 - 39999609
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39999405 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 39999504  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  39999505 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 39999604  T
Q  222 ccaag 226  Q
    |||||    
T  39999605 ccaag 39999609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 40004363 - 40004567
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40004363 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 40004462  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  40004463 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 40004562  T
Q  222 ccaag 226  Q
    |||||    
T  40004563 ccaag 40004567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 54343539 - 54343743
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54343539 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 54343638  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  54343639 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 54343738  T
Q  222 ccaag 226  Q
    |||||    
T  54343739 ccaag 54343743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 54348693 - 54348897
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54348693 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 54348792  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  54348793 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 54348892  T
Q  222 ccaag 226  Q
    |||||    
T  54348893 ccaag 54348897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 54990635 - 54990392
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  54990635 ggagtagagaggagagaaaacaagagaagagtatttgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggagaatttctac 54990536  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  54990535 tagagtgtgtgatctatccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacattccaaaggctccacaaac 54990436  T
Q  209 tcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||||||       ||||||||| |||||||||    
T  54990435 tcactagtatactccaagtttttttcattatacattagtgttcc 54990392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 36359664 - 36359868
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  36359664 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcctgagctctcaatttataaggagaatttctactagagtgtgtgat 36359763  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  36359764 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacatttcaaaggctccacaaactcactagtatact 36359863  T
Q  222 ccaag 226  Q
    |||||    
T  36359864 ccaag 36359868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 36354478 - 36354682
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||    
T  36354478 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactatttctgagctctcaatttataaagaggatttctactagagtgtgtgat 36354577  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  36354578 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacattccaaaggctccacaaattcactagtatact 36354677  T
Q  222 ccaag 226  Q
    |||||    
T  36354678 ccaag 36354682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 53798329 - 53798450
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53798329 ctactagagtgtgtgatctacccaatgtaggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccaaaggctccac 53798428  T
Q  205 aaactcactagtatactccaag 226  Q
    ||||  ||||||||||||||||    
T  53798429 aaaccaactagtatactccaag 53798450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 41393858 - 41394005
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  41393858 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttttccatccttgtgtttacattccaaaggcttcac 41393957  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  41393958 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 41394005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 51018853 - 51018732
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  51018853 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtgtacattccaaagtctccac 51018754  T
Q  205 aaactcactagtatactccaag 226  Q
    | |   ||||||||| ||||||    
T  51018753 ataacaactagtatattccaag 51018732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 9763420 - 9763273
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  9763420 ctactagagtgtgtgatctactcaatgtgggacataaaattttcaattcatgctttacactagtttctacatccttgtgtttacattccaaagtctccac 9763321  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  9763320 ataacaactagtatactccaagtttatgccaatatacactagtgttcc 9763273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 13695757 - 13695904
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13695757 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13695856  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13695857 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 13695904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 13711370 - 13711517
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13711370 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13711469  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13711470 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 13711517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 4207042 - 4207188
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| | |||| |    
T  4207042 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtg-ttacattccaatgtctcctc 4207140  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  4207141 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 4207188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 47045767 - 47045647
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||| || | |||| |    
T  47045767 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactagtttctatttcattgtgtttacattctaatgtctcctc 47045668  T
Q  205 aaactcactagtatactccaa 225  Q
    | |   |||||||||||||||    
T  47045667 ataacaactagtatactccaa 47045647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 13695431 - 13695503
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  13695431 gagaaaaccagagaagagtattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 13695503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 9763843 - 9763771
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||||| | |||||||||||| |||||||    
T  9763843 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaataccaatcccgagctctctatttata 9763771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 41393512 - 41393584
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  41393512 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 41393584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 53797898 - 53797970
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||||||| |||||||    
T  53797898 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgctaatcccgagctctctatttata 53797970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 13699067 - 13699113
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13699067 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 13699113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 21301371 - 21301325
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21301371 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 21301325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 36357870 - 36357916
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36357870 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 36357916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 40002798 - 40002844
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  40002798 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 40002844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 51019199 - 51019117
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 104  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | ||||||||| |||| |||||||  ||||||||    
T  51019199 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttatagagaggattt 51019117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 54346932 - 54346978
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  54346932 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 54346978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 13710938 - 13711010
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||||||| | |||||||||||||| |||||||    
T  13710938 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 13711010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 47046132 - 47046060
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||  ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  47046132 gagaaaaccagagaagatgattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 47046060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 8981823 - 8981777
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  8981823 catcaatggcgtaccctttcccaacaaaaataccattcttagtgatg 8981777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 13702945 - 13702991
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  13702945 catcagtggcgtaccctttcccaacaaaagtaccattcttagtgatg 13702991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 27711593 - 27711836
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27711593 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 27711692  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27711693 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 27711792  T
Q  209 tcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  27711793 tcactagtatactccaagtttttttcattatacactagtgttcc 27711836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 37404243 - 37404026
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37404243 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgggctctcaatttataaggaggatttctac 37404144  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37404143 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 37404044  T
Q  209 tcactagtatactccaag 226  Q
    ||||||||||||||||||    
T  37404043 tcactagtatactccaag 37404026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 37409362 - 37409145
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37409362 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttatac 37409263  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37409262 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 37409163  T
Q  209 tcactagtatactccaag 226  Q
    ||||||||||||||||||    
T  37409162 tcactagtatactccaag 37409145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 34318043 - 34317840
Alignment:
Q  23 agaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatc 122  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34318043 agaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatc 34317944  T
Q  123 tacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34317943 tacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactc 34317844  T
Q  223 caag 226  Q
    ||||    
T  34317843 caag 34317840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 27716713 - 27716930
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27716713 ggagaagagaggagagaaaaccagataagagtattcgattatcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 27716812  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  27716813 tagagtgtgtgatctacccgatgtgggacataaaaatttcaattcacactttacactagtttctccatccttgtgcttacgttccaaaggctccacaaac 27716912  T
Q  209 tcactagtatactccaag 226  Q
    ||||||||||||||||||    
T  27716913 tcactagtatactccaag 27716930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 36684474 - 36684270
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684474 gagaaaaccagagaagagtattcgattctcagttttggagtcaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 36684375  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684374 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 36684275  T
Q  222 ccaag 226  Q
    |||||    
T  36684274 ccaag 36684270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 11250948 - 11250731
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  11250948 ggagaagagaggagagaaaaccagagaagagtattcgattctcaattttggagtaaagaatactattcacgagctctcaatttataaggaggatttctac 11250849  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11250848 tagagtgtgtgatctaaccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaagactccacaaac 11250749  T
Q  209 tcactagtatactccaag 226  Q
    ||||| ||||||||||||    
T  11250748 tcactggtatactccaag 11250731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 5725365 - 5725512
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5725365 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 5725464  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  5725465 aaaccaactagtatactccaagttttttccattatacactagtgttcc 5725512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 3585301 - 3585448
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3585301 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacattttacactagtttctccatccttgtgtttacattccaaaggctccac 3585400  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||  ||||||||||||||||       || ||||||||||||||||    
T  3585401 aaaccaactagtatactccaagttttttccaatatacactagtgttcc 3585448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 105 - 251
Target Start/End: Original strand, 5730771 - 5730917
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  5730771 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggtttcac 5730870  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttc 251  Q
    ||||  |||||||||||||||        ||||||||||||||||||    
T  5730871 aaaccaactagtatactccaaattttttccattatacactagtgttc 5730917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 48246119 - 48245998
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  48246119 ctactagagtgtgtgatctacccaatgtgggacataaaaattttaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 48246020  T
Q  205 aaactcactagtatactccaag 226  Q
    | |   ||||||||||||||||    
T  48246019 ataacaactagtatactccaag 48245998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 50959069 - 50959010
Alignment:
Q  167 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 226  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50959069 gtttctccattcttgtgtttacattccaaaggctccacaaactcactagtatactccaag 50959010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 27715000 - 27715046
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27715000 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 27715046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 5730374 - 5730446
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | | |||||||||||| |||||||    
T  5730374 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 5730446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 3584870 - 3584942
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | | ||| |||||||| |||||||    
T  3584870 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcctgagctctctatttata 3584942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 37405954 - 37405908
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  37405954 catcagtggcgtaccctttcccaacaaaattatcattcttagtgatg 37405908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 48246509 - 48246427
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 104  Q
    |||||||||||| ||||| ||||||||||| |||||| |||||||||| | ||| ||||| |||| |||||||  ||||||||    
T  48246509 gagaaaaccagagaagaggattcgattctcggttttgtagtgaagaatcccatttccgaggtctctatttatagagaggattt 48246427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 5728674 - 5728721
Alignment:
Q  256 catcagtggcgtaccctttcccaac-aaaaataccattcttagtgatg 302  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5728674 catcagtggcgtaccctttcccaacaaaaaatatcattcttagtgatg 5728721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 3833 - 4050
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3833 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 3932  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3933 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 4032  T
Q  209 tcactagtatactccaag 226  Q
    ||||||||||||||||||    
T  4033 tcactagtatactccaag 4050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 2120 - 2166
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2120 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 2166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 33238338 - 33238568
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33238338 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 33238437  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33238438 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 33238537  T
Q  222 ccaagnnnnnnncattatacactagtgttcc 252  Q
    |||||       |||||||||||||||||||    
T  33238538 ccaagtttttttcattatacactagtgttcc 33238568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 33243515 - 33243745
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33243515 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 33243614  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33243615 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatgccaaaggctccacaaactcactagtatact 33243714  T
Q  222 ccaagnnnnnnncattatacactagtgttcc 252  Q
    |||||       |||||||||||||||||||    
T  33243715 ccaagtttttttcattatacactagtgttcc 33243745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 47994136 - 47994340
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994136 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 47994235  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994236 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 47994335  T
Q  222 ccaag 226  Q
    |||||    
T  47994336 ccaag 47994340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 47999311 - 47999515
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47999311 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 47999410  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  47999411 ctacccgatgtgagacataaaattttcaattcacactttacactagtttctccatccttatgtttacattccaaaggctccacaaactcactaatatact 47999510  T
Q  222 ccaag 226  Q
    |||||    
T  47999511 ccaag 47999515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 21080468 - 21080321
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21080468 ctactagagtgtgtgatctacccaacgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 21080369  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  21080368 aaaccaactagtatactccaagttttttccattatacactagtgttcc 21080321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 2234099 - 2233978
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2234099 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccac 2234000  T
Q  205 aaactcactagtatactccaag 226  Q
    ||||  ||||||||||||||||    
T  2233999 aaaccaactagtatactccaag 2233978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 32212112 - 32211965
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  32212112 ctactagagtgtgtgatctacccaatgtgagacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaagtctcaac 32212013  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  32212012 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 32211965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 42572600 - 42572747
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  42572600 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 42572699  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  42572700 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 42572747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 17496100 - 17496221
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  17496100 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 17496199  T
Q  205 aaactcactagtatactccaag 226  Q
    | |   ||||||||||||||||    
T  17496200 ataacaactagtatactccaag 17496221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 17557114 - 17556993
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  17557114 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 17557015  T
Q  205 aaactcactagtatactccaag 226  Q
    | |   ||||||||||||||||    
T  17557014 ataacaactagtatactccaag 17556993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 12935084 - 12935231
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  12935084 ctactaaagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 12935183  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  12935184 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 12935231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 19309023 - 19308876
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  19309023 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 19308924  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  19308923 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 19308876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 47176643 - 47176496
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  47176643 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 47176544  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  47176543 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 47176496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 112 - 226
Target Start/End: Complemental strand, 16538813 - 16538699
Alignment:
Q  112 agtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactca 211  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |   |    
T  16538813 agtgtgtgatctactcaatatgggacataaaattttcaattcacactttacactagtttctacatccttgtgtctacattccaaagtctccacataacaa 16538714  T
Q  212 ctagtatactccaag 226  Q
    |||||||||||||||    
T  16538713 ctagtatactccaag 16538699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 16626849 - 16626963
Alignment:
Q  112 agtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactca 211  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |   |    
T  16626849 agtgtgtgatctactcaatatgggacataaaattttcaattcacactttacactagtttctacatccttgtgtctacattccaaagtctccacataacaa 16626948  T
Q  212 ctagtatactccaag 226  Q
    |||||||||||||||    
T  16626949 ctagtatactccaag 16626963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 43893542 - 43893689
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| | |||| |    
T  43893542 ctactagagtgtgtgatctacccaatgagggacataaaattttcaattcacactttacgctagtttctacatcattgtgtttacattccaatgtctcctc 43893641  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  43893642 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 43893689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 47544828 - 47544749
Alignment:
Q  173 ccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||    
T  47544828 ccatccttgtgtttacattccaaaggctccacaaactctctagtatactccaagtttttttcattatacactagtgttcc 47544749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 2234456 - 2234384
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |||||||    
T  2234456 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatactaatcccgagctctctatttata 2234384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 12934666 - 12934738
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  12934666 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 12934738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 33241732 - 33241778
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33241732 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 33241778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 47997529 - 47997575
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  47997529 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 47997575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 19309437 - 19309365
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||| ||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  19309437 gagaaaaccagagaagaggatttgattctcggttttggagtgaagaatcccattcccgagctctctatttata 19309365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 21080865 - 21080793
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| |||||||||||||||||| |||||||||| | | |||||||||||| |||||||    
T  21080865 gagaaaaccagagaagaggattcgattctcagttttgaagtgaagaatgcaaatcccgagctctctatttata 21080793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 42572214 - 42572286
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | ||||||||| |||| |||||||    
T  42572214 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagttctctatttata 42572286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 43893138 - 43893210
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| |||||||||||  |||||||||||||||| | |||||||||||||| |||||||    
T  43893138 gagaaaaccagagaagaggattcgattctcgattttggagtgaagaatcccattcccgagctctctatttata 43893210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 16539238 - 16539166
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| |||  |||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  16539238 gagaaaaccagagaagaggatttaattctcggttttggagtgaagaatcccattcccgagctctctatttata 16539166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 16626424 - 16626496
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| |||  |||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  16626424 gagaaaaccagagaagaggatttaattctcggttttggagtgaagaatcccattcccgagctctctatttata 16626496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 17495672 - 17495744
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| |||| |||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  17495672 gagaaaaccagagaagaggattcaattctcggttttggagtaaagaatcccattcccgagctctctatttata 17495744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 17557542 - 17557470
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| |||| |||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  17557542 gagaaaaccagagaagaggattcaattctcggttttggagtaaagaatcccattcccgagctctctatttata 17557470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 47176976 - 47176904
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| |||||||| || |||||||||||||||||   |||||||||||||| |||||||    
T  47176976 gagaaaaccagagaagaggattcgattatcggttttggagtgaagaatctcattcccgagctctctatttata 47176904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 32212479 - 32212419
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagc 82  Q
    ||||||| |||| ||||| ||||||||||| ||||||||||||||||| | ||||||||||    
T  32212479 gagaaaatcagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagc 32212419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 55129060 - 55129276
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55129060 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 55129159  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  55129160 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat-cttgtgtttacattccaaaggctccacaaac 55129258  T
Q  209 tcactagtatactccaag 226  Q
    ||||||||||||||||||    
T  55129259 tcactagtatactccaag 55129276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 17368989 - 17369199
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17368989 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 17369088  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17369089 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 17369188  T
Q  209 tcactagtata 219  Q
      |||||||||    
T  17369189 caactagtata 17369199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 252
Target Start/End: Complemental strand, 20090421 - 20090191
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20090421 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 20090322  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||    
T  20090321 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatcctgatgtttacatgccaaaggctccacaaactcactagtatact 20090222  T
Q  222 ccaagnnnnnnncattatacactagtgttcc 252  Q
    |||||       |||||||||||||||||||    
T  20090221 ccaagtttttttcattatacactagtgttcc 20090191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 252
Target Start/End: Complemental strand, 20095546 - 20095316
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20095546 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 20095447  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||    
T  20095446 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatcctgatgtttacatgccaaaggctccacaaactcactagtatact 20095347  T
Q  222 ccaagnnnnnnncattatacactagtgttcc 252  Q
    |||||       |||||||||||||||||||    
T  20095346 ccaagtttttttcattatacactagtgttcc 20095316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 15762789 - 15762585
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15762789 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 15762690  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  15762689 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 15762590  T
Q  222 ccaag 226  Q
    |||||    
T  15762589 ccaag 15762585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 15767950 - 15767746
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15767950 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 15767851  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  15767850 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 15767751  T
Q  222 ccaag 226  Q
    |||||    
T  15767750 ccaag 15767746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 3481796 - 3481649
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3481796 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 3481697  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||||||||||       |||||||||||||||||||    
T  3481696 aaactcactagtatactccaagtttttttcattatacactagtgttcc 3481649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 34128558 - 34128437
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34128558 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 34128459  T
Q  205 aaactcactagtatactccaag 226  Q
    |||   ||||||||||||||||    
T  34128458 aaatcaactagtatactccaag 34128437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 17358566 - 17358686
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17358566 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacacta-tttctccatccttgtgtttacattccaaaggctccac 17358664  T
Q  205 aaactcactagtatactccaag 226  Q
    ||||  ||||||||| ||||||    
T  17358665 aaaccaactagtataatccaag 17358686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 30338247 - 30338126
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30338247 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactaatttctccatccttgtgtttacattccaaaggctccac 30338148  T
Q  205 aaactcactagtatactccaag 226  Q
    | |   ||||||||||||||||    
T  30338147 ataacaactagtatactccaag 30338126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 30341351 - 30341204
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30341351 ctactagagtgtgtgatctacctaatgtgggccataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 30341252  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  30341251 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 30341204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 54271312 - 54271433
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54271312 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttagactagtttctccatccttgtgtttacattccaaaggctccac 54271411  T
Q  205 aaactcactagtatactccaag 226  Q
    | |   ||||||||||| ||||    
T  54271412 ataacaactagtatacttcaag 54271433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 3476339 - 3476249
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 195  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  3476339 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaa 3476249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 4117097 - 4117007
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 195  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  4117097 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttcttcatcattgtgtttacattccaa 4117007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 3482238 - 3482166
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  3482238 gagaaaaccagataagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 3482166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 17358107 - 17358179
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||| | | |||||||||||| |||||||    
T  17358107 gagaaaaccagagaagaggattcgattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 17358179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 54270914 - 54270986
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  54270914 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 54270986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 3478485 - 3478439
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3478485 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 3478439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 15764557 - 15764511
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15764557 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15764511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 17362634 - 17362680
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17362634 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17362680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 17367276 - 17367322
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17367276 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17367322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 20092188 - 20092142
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20092188 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 20092142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 4117417 - 4117345
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||| | ||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  4117417 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 4117345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 30338578 - 30338506
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | | |||||||||||| |||||||    
T  30338578 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaaatcccgagctctctatttata 30338506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 34128995 - 34128923
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||| | | |||||| ||||| |||||||    
T  34128995 gagaaaaccagagaagaggattcgattctcagttttggagtgaagaatgcaaatcccgacctctctatttata 34128923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 3476771 - 3476699
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||   |||||||||||||||| | |||||||||||||| |||||||    
T  3476771 gagaaaaccagagaagaggattcgattcttgtttttggagtgaagaatcccattcccgagctctctatttata 3476699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 10321712 - 10321784
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    ||||||||| || ||||| |||| |||||| ||||||||||||||||| | | |||||||||||| |||||||    
T  10321712 gagaaaacctgagaagaggattcaattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 10321784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 30341771 - 30341720
Alignment:
Q  43 tcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    ||||||||| ||||||||||||||||| | | |||||||||||| |||||||    
T  30341771 tcgattctcggttttggagtgaagaatcccaatcccgagctctctatttata 30341720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 10321816 - 10321861
Alignment:
Q  24 gaaaaccagataagagtattcgattctcagttttggagtgaagaat 69  Q
    |||||||||| ||||| ||||||||||| ||||||| |||||||||    
T  10321816 gaaaaccagagaagaggattcgattctcggttttggggtgaagaat 10321861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 31881 - 32085
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31881 gagaaaaccagataagagtattcgattctcagttttggtgtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 31980  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31981 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 32080  T
Q  222 ccaag 226  Q
    |||||    
T  32081 ccaag 32085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 26709 - 26913
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26709 gagaaaaccagataagagtattcgattctcagttttggtgtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 26808  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26809 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttttgtttacattccaaaggctccacaaactcactagtatact 26908  T
Q  222 ccaag 226  Q
    |||||    
T  26909 ccaag 26913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 30102 - 30148
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30102 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 30148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 40392589 - 40392832
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| ||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40392589 ggagaagagaggagagaaaatcagagaaaagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 40392688  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  40392689 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacattgcaaaggctccacaaac 40392788  T
Q  209 tcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||||||       |||||||||||||||||||    
T  40392789 tcactagtatactccaagtttttttcattatacactagtgttcc 40392832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 42728379 - 42728175
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42728379 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 42728280  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42728279 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtaaact 42728180  T
Q  222 ccaag 226  Q
    |||||    
T  42728179 ccaag 42728175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 42723210 - 42723007
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42723210 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 42723111  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42723110 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtaaact 42723011  T
Q  222 ccaa 225  Q
    ||||    
T  42723010 ccaa 42723007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 44096638 - 44096842
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44096638 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 44096737  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  44096738 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttttgtttacattccaaatgctccacaaactcactagtatact 44096837  T
Q  222 ccaag 226  Q
    |||||    
T  44096838 ccaag 44096842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 35 - 226
Target Start/End: Complemental strand, 44754352 - 44754161
Alignment:
Q  35 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44754352 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 44754253  T
Q  135 gacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44754252 gacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 44754161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 35 - 226
Target Start/End: Complemental strand, 44759518 - 44759327
Alignment:
Q  35 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44759518 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 44759419  T
Q  135 gacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 226  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44759418 gacataaaattttcaattcacactttacactaatttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 44759327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 40518297 - 40518075
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttat----aaggaggattt 104  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||    
T  40518297 ggagaagagaggagagaaaacaagagaagagtattcgattctcagttttggagtgaagaatactattcacgagctctcaatttattaataaggaggattt 40518198  T
Q  105 ctactagagtgtgtgatctaccc-gatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctcca 203  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40518197 ctactagagtgtgtgatctaccccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttatattccaaaggctcca 40518098  T
Q  204 caaactcactagtatactccaag 226  Q
    ||||||||||| |||||||||||    
T  40518097 caaactcactattatactccaag 40518075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 35 - 223
Target Start/End: Original strand, 40519929 - 40520122
Alignment:
Q  35 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttat----aaggaggatttctactagagtgtgtgatctaccc-ga 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||    
T  40519929 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttattcataaggaggatttctactagagtgtgtgatctaccccga 40520028  T
Q  130 tgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactcc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40520029 tgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactcc 40520122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 4163042 - 4162895
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4163042 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 4162943  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||  ||||||||||||||||       |||||||||| ||||||||    
T  4162942 aaaccaactagtatactccaagttttttccattatacaccagtgttcc 4162895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 28751168 - 28751021
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28751168 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 28751069  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  28751068 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 28751021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 42724986 - 42724940
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42724986 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 42724940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 44756138 - 44756092
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44756138 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 44756092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 4163403 - 4163331
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | | |||||||||||| |||||||    
T  4163403 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 4163331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 28751555 - 28751483
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||| | ||||| ||||||||||| |||||||||||||||||   |||||||||||||| |||||||    
T  28751555 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctctatttata 28751483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 3360 - 3564
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3360 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 3459  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3460 ctaccggatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 3559  T
Q  222 ccaag 226  Q
    |||||    
T  3560 ccaag 3564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 81175 - 80971
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81175 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 81076  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81075 ctaccggatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 80976  T
Q  222 ccaag 226  Q
    |||||    
T  80975 ccaag 80971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 32010862 - 32011066
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32010862 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtatgat 32010961  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32010962 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 32011061  T
Q  222 ccaag 226  Q
    |||||    
T  32011062 ccaag 32011066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 32016036 - 32016240
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32016036 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 32016135  T
Q  122 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 221  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32016136 ctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaattcactagtatact 32016235  T
Q  222 ccaag 226  Q
    |||||    
T  32016236 ccaag 32016240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 2165638 - 2165394
Alignment:
Q  9 ggagcagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 108  Q
    |||| ||||| |||||||||| ||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2165638 ggagaagagatgagagaaaactagagaagagcatttgattctcaattttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 2165539  T
Q  109 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatt-ccaaaggctccacaaa 207  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  2165538 tagagtgtgtgatctacccgatgtgagacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattcccaaagactccacaaa 2165439  T
Q  208 ctcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||||||||||||||||        |||||||||||||||||||    
T  2165438 ctcactagtatactccaaaattttttcattatacactagtgttcc 2165394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 43998693 - 43998546
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43998693 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatttcaaaggctccac 43998594  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  43998593 aaaccaactagtatactccaagtttttttcattatacactagtgttcc 43998546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 17955281 - 17955134
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17955281 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacacttcacactagtttctccatccttgtgtttacattccaaaggctccac 17955182  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    |||   |||||||||||| |||       |||||||||||||||||||    
T  17955181 aaaacaactagtatactctaagtcttttccattatacactagtgttcc 17955134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 24885324 - 24885445
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  24885324 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 24885423  T
Q  205 aaactcactagtatactccaag 226  Q
    | |   ||||||||||||||||    
T  24885424 ataacaactagtatactccaag 24885445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 42513995 - 42513848
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||    
T  42513995 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactattttctacatccttgtgtttacattccaatgtctccac 42513896  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  42513895 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 42513848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 21641273 - 21641184
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 195  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||    
T  21641273 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactag-atctacatccttgtatttacattccaa 21641184  T

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Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 24884982 - 24885064
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 104  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||  ||||||||    
T  24884982 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaattccattcccgagctctctatttatagagaggattt 24885064  T

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Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 21645620 - 21645574
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21645620 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 21645574  T

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Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 32014255 - 32014301
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32014255 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 32014301  T

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Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 21643907 - 21643835
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||| | ||||||||| |||| |||||||    
T  21643907 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643835  T

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Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 21643092 - 21643020
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||| | ||||| ||||||||||| ||||||||||||||||| | ||||||||| |||| |||||||    
T  21643092 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643020  T

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Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 21643467 - 21643395
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||| | ||||| ||||||||||| ||||||||||||||||| | ||||||||| |||| |||||||    
T  21643467 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643395  T

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Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 42514245 - 42514182
Alignment:
Q  23 agaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctc 86  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||||   ||||||||||||||    
T  42514245 agaaaaccagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctc 42514182  T

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Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 21641592 - 21641520
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||| | ||||| |||||||||||  |||||||||||||||| | ||||||||| |||| |||||||    
T  21641592 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21641520  T

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Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 21641967 - 21641895
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||| | ||||| |||||||||||  |||||||||||||||| | ||||||||| |||| |||||||    
T  21641967 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21641895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 21642342 - 21642270
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||| | ||||| |||||||||||  |||||||||||||||| | ||||||||| |||| |||||||    
T  21642342 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21642270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 21642717 - 21642645
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||| | ||||| |||||||||||  |||||||||||||||| | ||||||||| |||| |||||||    
T  21642717 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21642645  T

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Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 43999056 - 43998984
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    ||||||| |||| ||||| ||||||||||||||||| |||| ||||||   | |||||||||||| |||||||    
T  43999056 gagaaaatcagagaagaggattcgattctcagttttagagtaaagaatgtaaatcccgagctctctatttata 43998984  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 19434003 - 19434043
Alignment:
Q  258 tcagtggcgtaccctttcccaacaaaaataccattcttagt 298  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  19434003 tcagtggcgtaccctttcccaacaaaaaccccatccttagt 19434043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 19570152 - 19570192
Alignment:
Q  258 tcagtggcgtaccctttcccaacaaaaataccattcttagt 298  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  19570152 tcagtggcgtaccctttcccaacaaaaaccccatccttagt 19570192  T

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Target: scaffold0594 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 8681 - 8534
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8681 ctactagagtgtgtgatctacccaatgtgggacataaaattttaaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 8582  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  8581 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 8534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 9034 - 8962
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||| ||| ||||| |||||||||||  |||||||||||||||| | |||||||||||||| |||||||    
T  9034 gagaaaactagagaagaggattcgattctcgtttttggagtgaagaatcccattcccgagctctctatttata 8962  T

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Target: scaffold0166 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 13133 - 12986
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13133 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13034  T
Q  205 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 252  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13033 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 12986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 18590 - 18500
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 195  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  18590 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttatactagtttctacatcattgtgtttacattccaa 18500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 15279 - 15233
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15279 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 13565 - 13493
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||||||| | |||||||||||||| |||||||    
T  13565 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 13493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 19018 - 18946
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 94  Q
    |||||||||||| ||||||||||||||||| |||||||||| |||||||| | ||| |||||||| |||||||    
T  19018 gagaaaaccagagaagagtattcgattctcggttttggagtaaagaataccaatcctgagctctctatttata 18946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 37654 - 37712
Alignment:
Q  105 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttaca 163  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37654 ctactggagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttaca 37712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 37279 - 37361
Alignment:
Q  22 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 104  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||||   |||||||||||||| |||||||  ||||||||    
T  37279 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctctatttatagagaggattt 37361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 15542 - 15588
Alignment:
Q  256 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15542 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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