View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2197_low_12 (Length: 298)
Name: NF2197_low_12
Description: NF2197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2197_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 37951690 - 37951426
Alignment:
| Q |
30 |
taattaatatccataagcccaagcccaccacaaaaaagtgttaaccccatcaatcaattagta---cttatgaaaaccatttgtctagttgaaatgttcc |
126 |
Q |
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| T |
37951690 |
taattaatattcataagcccaagcccaccacaaaaaagtgttaaccccatcaatcaattagtagtacttatgaaaaccatt-gtctagttgaaatgttcc |
37951592 |
T |
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| Q |
127 |
cttgtaccccatcgttgaataattacattttcacttttgcaattttgctctatagtcaactttgttgataaattt-acatcattacttgattgtgaattt |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37951591 |
cttgtaccccatcgttgaataattacattttcacttttgcaattttgctctgtagtcaactttgttgataaattttacatcattacttgattgtgaattt |
37951492 |
T |
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| Q |
226 |
tggtagacttattcatgaactaattgagattctaataaggagttatgtcttctcaatcaatttcat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37951491 |
tggtagacttattcatgaactaattgagattctaataaggagttatgtcttctcaatcaatttcat |
37951426 |
T |
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