View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2197_low_16 (Length: 272)
Name: NF2197_low_16
Description: NF2197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2197_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 41954424 - 41954574
Alignment:
| Q |
16 |
ataacatttttatagtcgaacttgcttaagggtataatttgaaggagaaattaaaaagtcagttcaaaatgatctattctttatatataatatagatttt |
115 |
Q |
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| T |
41954424 |
ataacacttttatagtcgaacttgtttaagggtataatttaaaggagaaattaaaaagtcagttcaaaatgatctattctttatatataacatagatttt |
41954523 |
T |
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| Q |
116 |
atttaataataataacttgtaaaagacttgtgctttcacaccgatcacgtaacg |
169 |
Q |
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| T |
41954524 |
att---taataataactagtaaaagacttgtgctttcacaccgatcacgtaacg |
41954574 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 32279662 - 32279711
Alignment:
| Q |
16 |
ataacatttttatagtcgaacttgcttaagggtataatttgaaggagaaa |
65 |
Q |
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||||||||||||| ||| || |||||||||| ||||||| |||||||||| |
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| T |
32279662 |
ataacatttttatggtcaaatttgcttaaggatataattagaaggagaaa |
32279711 |
T |
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