View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2197_low_19 (Length: 243)
Name: NF2197_low_19
Description: NF2197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2197_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 35394151 - 35394255
Alignment:
| Q |
1 |
ttccattagctggacaacctatggttcatcatccaatctctgcttgtcaaaaagtattctcactcattcactctcacatttcatattcatatctttaatc |
100 |
Q |
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| T |
35394151 |
ttccattagctggacaaccaatggttcatcatccaatctctgcttgtcaaaaagtattctcactcgttcactctcacatttcatattcatatctataatc |
35394250 |
T |
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| Q |
101 |
ttctg |
105 |
Q |
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||||| |
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| T |
35394251 |
ttctg |
35394255 |
T |
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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 35394325 - 35394406
Alignment:
| Q |
146 |
gccagattcctaatttggctcggatttatctcattggcttctacgaagaacgcgaatttgcattatacgtctctttcatctc |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35394325 |
gccagattcctaatttggctcggatttatctcattggcttctacgaagaacgcgaatttgcattatacgtctcttccatctc |
35394406 |
T |
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