View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2197_low_2 (Length: 524)
Name: NF2197_low_2
Description: NF2197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2197_low_2 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 14 - 515
Target Start/End: Original strand, 45126618 - 45127120
Alignment:
| Q |
14 |
cacatttaa-cataaaactaaccgaatagaggctatgcaagcacttagagcaacctcctagagcaggaaatccattgacatgattactgctactactcaa |
112 |
Q |
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| T |
45126618 |
cacatttaagcataaaactaaccgaatagaggctatgcaagcacttagagcaacctcctagagcaggaaatccattgacatgattactgctactactcaa |
45126717 |
T |
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| Q |
113 |
acaatttctctccaatctcttgacactttcatccccaacaagatttccattatgagctgtaagtttaaatgattcagaacagctcaaaggatgaagccta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45126718 |
acaatttctctccaatctcttgacactttcatccccaacaagatttccattatgagctgtaagtttaaatgattcagaacagctcaaaggatgaagccta |
45126817 |
T |
|
| Q |
213 |
ataccacaatagcaataaaccacatcacaagtctcattaggttgaaaaagttcaatccctctaactttcaaagcctttcccaaatcactttcacatgttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45126818 |
ataccacaatagcaataaaccacatcacaagtctcattaggttgaaaaagttcaatccctctaactttcaaagcctttcccaaatcactttcacatgttt |
45126917 |
T |
|
| Q |
313 |
cagaatcatctggtaacaaaggcatgtcataggatgtagtgtgtccatgttcaaatccaccaagagcagtggcagagtaagcagaatatagccacgcagc |
412 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45126918 |
cagaatcatctggtaacaaaggcatgtcatatgatgtagtgtgtccatgttcaaatccaccaagagcagtggcagagtaagcagaatatagccacgcagc |
45127017 |
T |
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| Q |
413 |
tagagcaggacaacatcggctacggtgaagttcatcatcagcagcatcatgtttgttggatttggaactgcatgcgttttttattccattcaagtgttca |
512 |
Q |
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| T |
45127018 |
tagagcaggacaacatcggctacggtgaagttcatcatcagcagcatcatgtttgttggatttggaactgcatgcgtttttgattccattcaagtgttca |
45127117 |
T |
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| Q |
513 |
tct |
515 |
Q |
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| T |
45127118 |
tct |
45127120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 341
Target Start/End: Complemental strand, 3701 - 3558
Alignment:
| Q |
198 |
aaaggatgaagcctaataccacaatagcaataaaccacatcacaagtctcattaggttgaaaaagttcaatccctctaactttcaaagcctttcccaaat |
297 |
Q |
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|||||||| || ||||| |||||||| ||||| |||| ||||||| ||||||| |||| | ||| ||||| ||||| ||||||||||||||| ||||| |
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| T |
3701 |
aaaggatgcagtctaattccacaataacaatataccaaatcacaactctcatttggttttataagctcaattcctctcactttcaaagccttttccaaac |
3602 |
T |
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| Q |
298 |
cactttcacatgtttcagaatcatctggtaacaaaggcatgtca |
341 |
Q |
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| T |
3601 |
catccacacatgtttctgagtcatctggcaccaaaggcatgtca |
3558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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