View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2197_low_4 (Length: 437)

Name: NF2197_low_4
Description: NF2197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2197_low_4
NF2197_low_4
[»] chr6 (11 HSPs)
chr6 (20-422)||(6953921-6954323)
chr6 (20-196)||(6920983-6921154)
chr6 (98-223)||(6942563-6942687)
chr6 (20-72)||(6942719-6942771)
chr6 (316-369)||(6952905-6952960)
chr6 (303-399)||(6934710-6934799)
chr6 (362-422)||(6942492-6942552)
chr6 (28-68)||(6934989-6935029)
chr6 (326-416)||(6947353-6947436)
chr6 (30-72)||(17369931-17369973)
chr6 (85-162)||(6947493-6947572)
[»] scaffold0354 (1 HSPs)
scaffold0354 (28-179)||(7734-7878)
[»] chr7 (5 HSPs)
chr7 (28-162)||(1985617-1985751)
chr7 (20-72)||(15571650-15571702)
chr7 (124-175)||(18514468-18514519)
chr7 (29-74)||(13416661-13416706)
chr7 (303-339)||(15571406-15571442)
[»] chr8 (1 HSPs)
chr8 (359-395)||(13112216-13112252)


Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Complemental strand, 6954323 - 6953921
Alignment:
Q  20 tggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagtatgnnnnnnnnctgatgatttacttgtttgaatttgtgctagcttgtc 119  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||        | ||||||||||||||||||||||||| |||||||||    
T  6954323 tggtccgctgccaagggatatgttgaaagcttggtatcgacttcttgaaagtatgttttttttccgatgatttacttgtttgaatttgtgttagcttgtc 6954224  T
Q  120 tatggtacaatgtattttgtgattattttcataccatggttttgatttgattatattgtttgaatgattatctgtttgattgtctattttgtttcagttc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954223 tatggtacaatgtattttgtgattattttcataccatggttttgatttgattatattgtttgaatgattatctgtttgattgtctattttgtttcagttc 6954124  T
Q  220 attctttgtatggccaagctcattcatagcaagaacatatagtcgtttcctcttttttattcgataatcattttgccttaaagttatttactgttgtaat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954123 attctttgtatggccaagctcattcatagcaagaacatatagttgtttcctcttttttattcgataatcattttgccttaaagttatttactgttgtaat 6954024  T
Q  320 tttgagcttttatgtgtatggtacaatggtatagcagccatttttctaagctcataccataattaatagttcaatagtatccatggttagaatgcaccct 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954023 tttgagcttttatgtgtatggtacaatggtatagcagccatttttctaagctcataccataattaatagttcaatagtatccatggttagaatgcaccct 6953924  T
Q  420 ttg 422  Q
    |||    
T  6953923 ttg 6953921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 6921154 - 6920983
Alignment:
Q  20 tggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagtatgnnnnnnnnctgatgatttacttgtttgaatttgtgctagcttgtc 119  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |        | ||||||||||||||||||||||||| ||||||||     
T  6921154 tggttcactgccaagggatatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttc-gatgatttacttgtttgaatttgtgttagcttgtg 6921056  T
Q  120 tatggtacaatgtattttgtgattattttcataccatggttttgatttgattatattgtttgaatgattatctgttt 196  Q
    ||||||||||||||||||||||| |||   ||| |||||||||||||||||||||||| ||||||||||||||||||    
T  6921055 tatggtacaatgtattttgtgataatt---atatcatggttttgatttgattatattg-ttgaatgattatctgttt 6920983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 6942687 - 6942563
Alignment:
Q  98 tttgaatttgtgctagcttgtctatggtacaatgtattttgtgattattttcataccatggttttgatttgattatattgtttgaatgattatctgtttg 197  Q
    |||||||||||| |||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||| | ||||||| ||||||||||||||||||     
T  6942687 tttgaatttgtgttagcttgtgtatggtagaatgtattttgtgattatttccatatcatggttttgattttaatatattg-ttgaatgattatctgtttt 6942589  T
Q  198 attgtctattttgtttcagttcattc 223  Q
     ||||| ||||| |||||||||||||    
T  6942588 cttgtcaattttatttcagttcattc 6942563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 6942771 - 6942719
Alignment:
Q  20 tggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagta 72  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  6942771 tggtccactgccaagggatatgttgaaagcttggtatcaacttcttgaaagta 6942719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 6952960 - 6952905
Alignment:
Q  316 taattttgagcttttatgtgtatggtacaatgg--tatagcagccatttttctaag 369  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||||||||||||    
T  6952960 taattttgagcttttatgtgtatggtagaatggtatatagcagccatttttctaag 6952905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 303 - 399
Target Start/End: Complemental strand, 6934799 - 6934710
Alignment:
Q  303 ttatttactgttgtaattttgagcttttatgtgtatggtacaatggtatagcagccatttttctaagctcataccataattaatagttcaatagtat 399  Q
    ||||||||| || || |||||||||||||||||||||||||||||||||       |  ||||||||||||| ||| ||||||||||||| ||||||    
T  6934799 ttatttactattatagttttgagcttttatgtgtatggtacaatggtat-------aaatttctaagctcatgccaaaattaatagttcagtagtat 6934710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 422
Target Start/End: Complemental strand, 6942552 - 6942492
Alignment:
Q  362 tttctaagctcataccataattaatagttcaatagtatccatggttagaatgcaccctttg 422  Q
    |||||||||||||  |||| ||||||||||||||| |||||| | ||||||||||||||||    
T  6942552 tttctaagctcatgacatatttaatagttcaatagcatccattgctagaatgcaccctttg 6942492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 6935029 - 6934989
Alignment:
Q  28 tgccaagggttatgttgaaagcttggtatcgacttcttgaa 68  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  6935029 tgccaagggatatgttgaaagtttggtatcgacttcttgaa 6934989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 416
Target Start/End: Complemental strand, 6947436 - 6947353
Alignment:
Q  326 cttttatgtgtatggtacaatggtatagcagccatttttctaagctcataccataattaatagttcaatagtatccatggttagaatgcac 416  Q
    |||| ||||||||||||||||||||||  ||     |||||||||| || | ||||||| |||||||||||||||||| | ||||||||||    
T  6947436 ctttgatgtgtatggtacaatggtata--ag-----tttctaagctgatgctataattagtagttcaatagtatccattgctagaatgcac 6947353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 17369931 - 17369973
Alignment:
Q  30 ccaagggttatgttgaaagcttggtatcgacttcttgaaagta 72  Q
    ||||||| |||||||||||||||||||| |||| |||||||||    
T  17369931 ccaagggctatgttgaaagcttggtatctacttgttgaaagta 17369973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 6947572 - 6947493
Alignment:
Q  85 gatgatttacttgtttgaatttgtgctagcttgtctatg--gtacaatgtattttgtgattattttcataccatggtttt 162  Q
    ||||||||||||||||| ||||| | ||| || | ||||  ||||||| |||| |||||||||||||| | |||||||||    
T  6947572 gatgatttacttgtttgtatttgagttagtttatgtatgatgtacaatatattgtgtgattattttcaaatcatggtttt 6947493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 179
Target Start/End: Original strand, 7734 - 7878
Alignment:
Q  28 tgccaagggttatgttgaaagcttggtatcgacttcttgaaagtatgnnnnnnnnctgatgatttacttgtttgaatttgtgctagcttgtctatggtac 127  Q
    ||||||||| ||||| |||||||||||| |||||||||||| |||||          ||| |||||||||||||||||| || ||| ||||     ||||    
T  7734 tgccaagggatatgtagaaagcttggtaccgacttcttgaaggtatgttttgctc--gatcatttacttgtttgaatttttgttagtttgt-----gtac 7826  T
Q  128 aatgtattttgtgattattttcataccatggttttgatttgattatattgtt 179  Q
    | ||| || ||||||||||||||||  |||||||||||||||||||||||||    
T  7827 attgtcttgtgtgattattttcatattatggttttgatttgattatattgtt 7878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 1985751 - 1985617
Alignment:
Q  28 tgccaagggttatgttgaaagcttggtatcgacttcttgaaagtatgnnnnnnnnctgatgatttacttgtttgaatttgtgctagcttgtctatg-gta 126  Q
    ||||||||| || ||||||||||||||||||| |||||||| ||| |        | ||||||||||||||||||||||||| ||| |||| ||||  ||    
T  1985751 tgccaagggatacgttgaaagcttggtatcgatttcttgaaggtaagtttctcttc-gatgatttacttgtttgaatttgtgttagtttgtgtatgtata 1985653  T
Q  127 caatgtattttgtgattattttcataccatggtttt 162  Q
    |||| |||| |||||||||||||| | |||||||||    
T  1985652 caatatattgtgtgattattttcaaatcatggtttt 1985617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 15571702 - 15571650
Alignment:
Q  20 tggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagta 72  Q
    ||||||| ||||| ||| |||||||||||||||||||||||||| ||||||||    
T  15571702 tggtccaatgccaggggatatgttgaaagcttggtatcgacttcctgaaagta 15571650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 18514519 - 18514468
Alignment:
Q  124 gtacaatgtattttgtgattattttcataccatggttttgatttgattatat 175  Q
    |||||||||||  ||| |||||||||||| ||||||||||||||||||||||    
T  18514519 gtacaatgtatcgtgtcattattttcatatcatggttttgatttgattatat 18514468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 13416706 - 13416661
Alignment:
Q  29 gccaagggttatgttgaaagcttggtatcgacttcttgaaagtatg 74  Q
    |||||||| ||||||||||||||||||||||||||  |||||||||    
T  13416706 gccaagggatatgttgaaagcttggtatcgacttcaagaaagtatg 13416661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 15571442 - 15571406
Alignment:
Q  303 ttatttactgttgtaattttgagcttttatgtgtatg 339  Q
    |||||||||||| |||||||||||||||| |||||||    
T  15571442 ttatttactgttttaattttgagcttttaagtgtatg 15571406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 13112216 - 13112252
Alignment:
Q  359 atttttctaagctcataccataattaatagttcaata 395  Q
    ||||||||||||| || ||||||||||||||||||||    
T  13112216 atttttctaagcttatgccataattaatagttcaata 13112252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University