View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2197_low_5 (Length: 427)
Name: NF2197_low_5
Description: NF2197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2197_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 15 - 408
Target Start/End: Original strand, 35696778 - 35697171
Alignment:
| Q |
15 |
tatgatataacgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgnnn |
114 |
Q |
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| T |
35696778 |
tatgatataacgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgaaa |
35696877 |
T |
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| Q |
115 |
nnnntgattcgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaa |
214 |
Q |
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| T |
35696878 |
aaaatgattcgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaa |
35696977 |
T |
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| Q |
215 |
aggtgtgatcgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtggtggctgccgcgatagcgaaaggattgtatccgttgcca |
314 |
Q |
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| T |
35696978 |
aggtgtgatcgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtggtggctgccgcgatagcgaaaggattgtatccgttgcca |
35697077 |
T |
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| Q |
315 |
ttgcacgtgccaagaaagacggtgaataattcaatgtttgagaaatggccgccggagaaggacaatggcggggagatgttgaacacgaagatgg |
408 |
Q |
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| T |
35697078 |
ttgcacgtgccaagaaagacggtgaataattcaatgtttgagaaatggccgccggagaaggacaatggcggggagatgttgaacacgaagatgg |
35697171 |
T |
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