View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2197_low_7 (Length: 396)
Name: NF2197_low_7
Description: NF2197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2197_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 27559747 - 27560121
Alignment:
| Q |
19 |
acatccaacataaaatttggcaagcacaacagccacagacaggtgcttcttttcactacttagaacaacaagtccaataataacattaactagactaaac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27559747 |
acatccaacataaaatttggcaagcacaacagccacagacaggtgcttcttttcattacttagaacaacaagtccaataataacattaactagactaaac |
27559846 |
T |
|
| Q |
119 |
tctgccactactgaacaacctctgataagcatacctttttctgatgatcctccaggccatacattcccagaacaaattccaactcctgattctcctcctg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27559847 |
tctgccactactgaacaacctctgataagcatacctttttctgatgatcctccaggccatacatttccagaacaaattccaactcctgattctcctcctg |
27559946 |
T |
|
| Q |
219 |
taacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattatagacaatcttgaaggcctctaaaatcacaatgcagataatgtttgagaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27559947 |
taacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattatagacaatcttgaaggcctctaaaatcacaatgcagataatgtttgagaaat |
27560046 |
T |
|
| Q |
319 |
atggaaagtataggagcagatacacatg----------caaaacaaaggaaaagaaaaacattgcaatcaaattc |
383 |
Q |
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| T |
27560047 |
atggaaagtataggagcagatacacatgcaaaacacaacaaaacaaaggaaaagaaaaacattgcaatcaaattc |
27560121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 79 - 355
Target Start/End: Original strand, 36667371 - 36667645
Alignment:
| Q |
79 |
tagaacaacaagtccaataataacattaactagactaaactctgccactactgaacaacctctgataagcatacctttttctgatgatcctccaggccat |
178 |
Q |
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| T |
36667371 |
tagaataacgagtccaataattacattaactagactaaactctgccactactgaacaacttcagatcagcatacctttt-ctgataatcctccagaccat |
36667469 |
T |
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| Q |
179 |
acattcccagaacaaattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattatagacaatcttg |
278 |
Q |
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|||| ||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36667470 |
acatatccaaaacaaattctaactcctggttctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattagagacaatctt- |
36667568 |
T |
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| Q |
279 |
aaggcctctaaaatcacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatgcaaaacaaa |
355 |
Q |
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| T |
36667569 |
aaggcctctaaaatcagaatgcagataatgtttgagaatcatggaaagtatagttgcagatacacatgcaaaacaaa |
36667645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 79 - 379
Target Start/End: Original strand, 29409207 - 29409518
Alignment:
| Q |
79 |
tagaacaacaagtccaataataacattaactagactaaactctgccactactgaacaacctctgataagcatacctttttctgatgatcctccaggccat |
178 |
Q |
| |
|
||||| |||||||| || ||| |||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||| ||||| ||| || ||||||| |
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| T |
29409207 |
tagaataacaagtcaaaaaattacattaactagactaagctctgccactactgaacaaccccagatcagcatacctttt-ctgataatcttctaggccat |
29409305 |
T |
|
| Q |
179 |
acattcccagaacaaattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaa-----ttatagacaa |
273 |
Q |
| |
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|||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
29409306 |
acatatccaaaacaaattctaactcccgattctcctcctgtaacttttcaatctgtaacaaaacatcttaatgagttggttgaaaattagttatagacaa |
29409405 |
T |
|
| Q |
274 |
tcttgaaggcctctaaaatcacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatg-------caaaacaaaggaaaagaaaa |
366 |
Q |
| |
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||||||||||| ||||||||| |||||| |||||||||||||| ||||||| |||||| ||||||||||| | |||||||||||||||||||| |
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| T |
29409406 |
tcttgaaggccactaaaatcataatgcatataatgtttgagaatcatggaaaatataggtgcagatacacaagcaaaacacaaaacaaaggaaaagaaaa |
29409505 |
T |
|
| Q |
367 |
acattgcaatcaa |
379 |
Q |
| |
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||||||||||||| |
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| T |
29409506 |
acattgcaatcaa |
29409518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 29409099 - 29409160
Alignment:
| Q |
19 |
acatccaacataaaatttggcaagcacaacagccacagacaggtgcttcttttcactactta |
80 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||| | |||||||||||||| |||||| |
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| T |
29409099 |
acatctaacataaaatttggtaagcacaacagccacaggcgggtgcttcttttcaatactta |
29409160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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